8J3R
Cryo-em structure of the ascas12f-hkra-sgrnas3-5v7-target dna
PDB DOI: 10.2210/pdb8j3r/pdb
Classification: RNA BINDING PROTEIN/DNA/RNA Organism(s): Sulfoacidibacillus Thermotolerans
Deposited: 2023-04-18 Deposition Author(s): Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.95 Å
Cryo-em structure of the ascas12f-hkra-sgrnas3-5v7-target dna
Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.
Primary Citation of Related Structures: 8J3R
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transposase IS605 OrfB C-terminal domain-containing protein | A | 432 | Sulfoacidibacillus Thermotolerans | MGHHHHHHGSMIKVYRYEIVKPLDLDWKEFGTILRQLQQETRFALNKATQLAWEWMGFSSDYKDNHGEYPKSKDILGYTNVHGYAYHTIKTKAYRLNSGNLSQTIKRATDRFKAYQKEILRGDMSIPSYKRDHPLDLIKENISVNRMNHGDYIASLSLLSNPAKQEMNVKRKISVIIIVRGAGKTIMDRILSGEYQVSASQIIHKDRKNKWYLNISYRFEPQTRVLDLNKIMGIDLGVAVAAYMAFQHTPARYKLEGGEIENFRRQVESRRISMLRQGKYAGGARGGHGRDKRIKPIEQLRDKIANFRDTTNHRYSRYIVDMAIKEGCGTIQMEDLTNIRDIGSRFLQNWTYYDLQQKIIYKAEEAGIKVIKIDPQYTSQRCSECGNIDSGNRIGQAIFKCRACGYEANADYNAARNIAIPNIDKIIAESIK |
| Transposase IS605 OrfB C-terminal domain-containing protein | B | 432 | Sulfoacidibacillus Thermotolerans | MGHHHHHHGSMIKVYRYEIVKPLDLDWKEFGTILRQLQQETRFALNKATQLAWEWMGFSSDYKDNHGEYPKSKDILGYTNVHGYAYHTIKTKAYRLNSGNLSQTIKRATDRFKAYQKEILRGDMSIPSYKRDHPLDLIKENISVNRMNHGDYIASLSLLSNPAKQEMNVKRKISVIIIVRGAGKTIMDRILSGEYQVSASQIIHKDRKNKWYLNISYRFEPQTRVLDLNKIMGIDLGVAVAAYMAFQHTPARYKLEGGEIENFRRQVESRRISMLRQGKYAGGARGGHGRDKRIKPIEQLRDKIANFRDTTNHRYSRYIVDMAIKEGCGTIQMEDLTNIRDIGSRFLQNWTYYDLQQKIIYKAEEAGIKVIKIDPQYTSQRCSECGNIDSGNRIGQAIFKCRACGYEANADYNAARNIAIPNIDKIIAESIK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (37-MER) | d | 37 | NA | GAATGGTTCAGCGCGCCTAATTTCCTAATTTAGAAAA |
| DNA (38-MER) | e | 38 | NA | TTTTCTAAATTAGGAAATTAGGTGCGCTTGAACCATTC |
| RNA (118-MER) | c | 118 | NA | GGAUUCGUCGGUUCAGCGACGAUAAGCCGAGAAGUGCCAAUAAAACUGUUAAGUGGUUUGGUAACGCUCGGUAAGGUCCGAAAGGAGAACCACUGAACGGAAAUUAGGCGCGCUUGGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-18 Deposition Author(s): Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.