8J12
Cryo-em structure of the ascas12f-sgrna-target dna ternary complex
PDB DOI: 10.2210/pdb8j12/pdb
Classification: RNA BINDING PROTEIN/DNA/RNA Organism(s): Acidibacillus Sulfooxidans , Acidibacillus Sulfuroxidans
Deposited: 2023-04-12 Deposition Author(s): Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.08 Å
Cryo-em structure of the ascas12f-sgrna-target dna ternary complex
Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.
Primary Citation of Related Structures: 8J12
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transposase IS605 OrfB C-terminal domain-containing protein | A | 432 | Acidibacillus Sulfooxidans , Acidibacillus Sulfuroxidans | MGHHHHHHGSMIKVYRYEIVKPLDLDWKEFGTILRQLQQETRFALNKATQLAWEWMGFSSDYKDNHGEYPKSKDILGYTNVHGYAYHTIKTKAYRLNSGNLSQTIKRATDRFKAYQKEILRGDMSIPSYKRDIPLDLIKENISVNRMNHGDYIASLSLLSNPAKQEMNVKRKISVIIIVRGAGKTIMDRILSGEYQVSASQIIHDDRKNKWYLNISYDFEPQTRVLDLNKIMGIDLGVAVAVYMAFQHTPARYKLEGGEIENFRRQVESRRISMLRQGKYAGGARGGHGRDKRIKPIEQLRDKIANFRDTTNHRYSRYIVDMAIKEGCGTIQMEDLTNIRDIGSRFLQNWTYYDLQQKIIYKAEEAGIKVIKIDPQYTSQRCSECGNIDSGNRIGQAIFKCRACGYEANADYNAARNIAIPNIDKIIAESIK |
| Transposase IS605 OrfB C-terminal domain-containing protein | B | 432 | Acidibacillus Sulfooxidans , Acidibacillus Sulfuroxidans | MGHHHHHHGSMIKVYRYEIVKPLDLDWKEFGTILRQLQQETRFALNKATQLAWEWMGFSSDYKDNHGEYPKSKDILGYTNVHGYAYHTIKTKAYRLNSGNLSQTIKRATDRFKAYQKEILRGDMSIPSYKRDIPLDLIKENISVNRMNHGDYIASLSLLSNPAKQEMNVKRKISVIIIVRGAGKTIMDRILSGEYQVSASQIIHDDRKNKWYLNISYDFEPQTRVLDLNKIMGIDLGVAVAVYMAFQHTPARYKLEGGEIENFRRQVESRRISMLRQGKYAGGARGGHGRDKRIKPIEQLRDKIANFRDTTNHRYSRYIVDMAIKEGCGTIQMEDLTNIRDIGSRFLQNWTYYDLQQKIIYKAEEAGIKVIKIDPQYTSQRCSECGNIDSGNRIGQAIFKCRACGYEANADYNAARNIAIPNIDKIIAESIK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (38-MER) | d | 38 | NA | GAATGGTTCAAGCGCACCTAATTTCCTAAATTAGAAAA |
| DNA (38-MER) | e | 38 | NA | TTTTCTAATTTAGGAAATTAGGTGCGCTTGAACCATTC |
| RNA (247-MER) | c | 224 | NA | GGAUACUUCUAUUCGUCGGUUCAGCGACGAUAAGCCGAGAAGUGCCAAUAAAACUGUUAAGUGGUUUGGUAACGCUCGGUAAGGUAGCCAAAAGGCUGAAACUCCGUGCACAAAGACCGCACGGACGCUUCACAUAUAGCUCAUAAACAAAUGUCGUCGACCUCUAAUAGCGAAAGUUUGCGAGCUAGCUUGUGGAGUGUGAACGGAAAUUAGGUGCGCUUGGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-04-12 Deposition Author(s): Aburatani, H. , Hino, T. , Hiramoto, T. , Hirano, H. , Hoshino, A. , Ishiguro, H. , Itoh, Y. , Kirita, Y. , Kise, Y. , Matoba, S. , Mori, H. , Motooka, D. , Nakagawa, R. , Nureki, O. , Ohmori, T. , Omura, N.S. , Ozaki, Y. , Siksnys, V. , Takeda, N.S. , Tasaka, S. , Togashi, T. , Tokuyama, T. , Uosaki, H. , Yachie, N. , Yamano, H.