8IWH
Structure and characteristics of a photosystem ii supercomplex containing monomeric lhcx and dimeric fcpii antennae from the diatom thalassiosira pseudonana
PDB DOI: 10.2210/pdb8iwh/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thalassiosira Pseudonana
Deposited: 2023-03-30 Deposition Author(s): Feng, Y. , Li, Z.H. , Shen, J.R. , Wang, W.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.68 Å
Structure and characteristics of a photosystem ii supercomplex containing monomeric lhcx and dimeric fcpii antennae from the diatom thalassiosira pseudonana
Feng, Y. , Li, Z.H. , Shen, J.R. , Wang, W.D.
Primary Citation of Related Structures: 8IWH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 333 | Thalassiosira Pseudonana | VSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGMHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDL |
| Photosystem II reaction center protein J | J | 39 | Thalassiosira Pseudonana | MVNTGRVPLWLVGLVGGFAVITIVSLFIYGSYSGLGSSL |
| Photosystem II reaction center protein K | K | 44 | Thalassiosira Pseudonana | MESLLLARLPEAYVVFSPLVDVFPVIPVFFLLLAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 38 | Thalassiosira Pseudonana | MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN |
| Photosystem II reaction center M protein, plastid | M | 113 | Thalassiosira Pseudonana | MKSFQIVTLFAMIAATMAFAPNKAPQVAQRFAESGFDMKKAAIAAIPAAIATPAFAMDSIVEALPTQTLSLEVQFGAYLAVLLGTFLPVLFLINLYIQTESRKAGRDGGIDSE |
| Photosystem II subunit, PsbN. | N | 30 | Thalassiosira Pseudonana | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Oxygen-evolving enhancer protein 1 | O | 305 | Thalassiosira Pseudonana | MKLVAALSLVAGVSAFAPAQTNSRSTQLNAMKDDIAKVGAAALASAAIFGITAAPAQAITKSELNQLSYLQVKGTGLANRCSEVIGEDTITPKSGARLVDMCIEPKAWAVEEEIGKAGKTEKKFVNSKVMTRQTYTLEGIEGSLKTDGGKIVFTEEEGIDYAPTTVQLPGGERVPFLFTVKELVATGNGGAFKPGFQMGGDFSVPSYRTGLFLDPKGRGGVTGYDMAVALPGLQSGEEGDAELFKENNKTFEVGNGRIEMEVNKVNAEESEIGGVFVASQSGDTDMGSKVPKKILTKGIFYAKIQ |
| Photosystem II reaction center protein T | T | 28 | Thalassiosira Pseudonana | MEALVYTFLLIGTLMVIFFAVFFRDTPR |
| PS II complex 12 kDa extrinsic protein | U | 148 | Thalassiosira Pseudonana | MKLAVIAALVSSAAAFAPNAQPAAQTALNAESDRRSFLGAAAAFGAAALPLAANAVVDYENVALLGGSQTVDLNNANVRAYLRMPGMYPAAAGKIVTHGPYKSVADVYNIPGLTNAEKEVIKKYESRFTAKAVAPEYAIDRINNGLYR |
| Cytochrome c-550 | V | 162 | Thalassiosira Pseudonana | MFKTYSKSFACILFCIFNIFVVSASAIDLDEATRTVVTDSSGNTTVLTPEQVKRGKRLFNATCGACHTGGITKTNPNVGLDPEALSLATPRRDNISALVDYLKNPTTYDGLESIAEIHPSIKSADIYPRMRSLTDEDLYSIAGHIMLQPKIVAEKWGGGKIY |
| Photosystem II subunit, PsbW | W | 54 | Thalassiosira Pseudonana | TEGTNEWFGVDDIRVLAVLFIGHYFILSLWLGQYGNATEDDDADFFGEIDYTGS |
| Photosystem II CP47 reaction center protein | B | 509 | Thalassiosira Pseudonana | MALPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGLWSFEGVALSHIVLSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSGLLCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPSWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFWAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVESSVTEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMDKGDGIAEAWLGHPIFRDKDGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTFGHANFALLFFLGHLWHGGRTIFRDVFTGIGAEVTEQVEFGAFQKLGDKTTKKQGAV |
| Photosystem II reaction center X protein | X | 38 | Thalassiosira Pseudonana | MTTSLANFIASLTAGALVLSAIGIALIIISKNDRVQRS |
| Photosystem II reaction center protein Z | Z | 61 | Thalassiosira Pseudonana | MITALTALFVLVSLALVVTVPVALATPGEWETSKDQFNKIFQLWVGLVVAIATADGISTAI |
| Fucoxanthin chl a/c protein, lhca clade | 3 | 220 | Thalassiosira Pseudonana | WNEAPRALPFGSAPPTLDGSLVGDVGFDPIGFSTAPFASFNNPIYQEGNFMTDVQWLREAELTHGRIAQLAVVGFIWPALFGTFPGNENFGGADAYSYVNPLEAINHIPSLAIYQIVGGMAWVEYQRVQRIKEQGKDRISGDIGLAYPGGWNPFNINYSPEEYAEKQLQEIKHCRLAMLGAFGLFFQALNSGEDIVSQLSPAFAAPEYAAKAGYFLPQGI |
| Fucoxanthin-chlorophyll a-c binding protein, plastid | 4 | 196 | Thalassiosira Pseudonana | MMKLAVFASLIAGSSAFAPAQVGRASTSVQAFENEIGVLPPTGFFDPAGLSDGISQEKFDSYRLAELKHGRAAMLAVLGYVAPETYRFGYDLIPGELSTNDIPNGVAAIKAIPFGGWAQMIAFVGCVETYGWFTSPTGVLDLPDDILAKRQTAELQHGRLAMLAFLELIRHDSQNLAQPGFDGLDNLITGLPFLYN |
| Fucoxanthin chlorophyll a/c protein 6 | 5 | 192 | Thalassiosira Pseudonana | MYKSLLIASSIAAASAFAPVQVAKTTTSLNAFESEIGAQAPLGFWDPLGFLDRADQETFDRLRYVELKHGRIAQLAFVGNLITRAGYHLPGDISLGRAFADVPNGIAAINGPDAISTAALLQTLAFIGFLETRVMIDATGESQFRGDFRNGFDFGWDKQSPEWQTNKRAIELNQGRAAMMGILGLMMHEQVG |
| Fucoxanthin chlorophyll a/c protein 5 | 6 | 199 | Thalassiosira Pseudonana | MYKSLLIASSIAAASAFAPAPVAKSTTAINAFENELGAQPPLGFFDPLGMLDEAGQARFDRLRYVELKHGRICQLAFLGNIITRAGIHLPGAISLDGTKFSDIGNGWAGSFEVPKDGALQILFFVGFLELFVMKDVTGEGEFVGDFRNGALDFGWDSFSEETKLQKRAIELNNGRAAMMGILGLMVHEQLGGELPIVGQ |
| Fucoxanthin chlorophyll a/c protein-LI818 clade | 7 | 199 | Thalassiosira Pseudonana | MKLAIISTLIAGAAAFAPQTVGPSTSALSATRAGLVGALPPVGFFDPAGFAAKASPEELARYREVEIMHGRFAQMAVLGFIIPEKCAYDGAFGDDFLAPTGRALEAINTDPVWLALTLGVISALETLRLLQTEPGTRTDAKIEGLGWRPKSEAEFVNYQVRELQQGRLAMLAFAGEIAQELVNEKPLLVNLQDSGFVSW |
| Fucoxanthin chlorophyll a/c protein-LI818 clade | 0 | 199 | Thalassiosira Pseudonana | MKLAIISTLIAGAAAFAPQTVGPSTSALSATRAGLVGALPPVGFFDPAGFAAKASPEELARYREVEIMHGRFAQMAVLGFIIPEKCAYDGAFGDDFLAPTGRALEAINTDPVWLALTLGVISALETLRLLQTEPGTRTDAKIEGLGWRPKSEAEFVNYQVRELQQGRLAMLAFAGEIAQELVNEKPLLVNLQDSGFVSW |
| Photosystem II reaction center protein Ycf12 | Y | 34 | Thalassiosira Pseudonana | MVNWQVIGQLVSTGAIMLLGPAIIILLALKKGNL |
| Photosystem II subunit, PsbQ. | Q | 211 | Thalassiosira Pseudonana | MKIVLALVAASSVSAFAPQSNGRQSVAMQAENSRREALSTIAAATAAILPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSDQSAETYSPYSVYGKVGSKDALFEAGNAGEIARKKGYIVESQKRLKNLPGYVEKKQWFNVKDELTRYMYETRGAVRGLAQTPEQKKLAKAFFQAIEEASLQATLKNGDKCAAASADSIKLLDQFYASL |
| Fucoxanthin chlorophyll a/c light-harvesting protein, major type | 9 | 193 | Thalassiosira Pseudonana | MKSVIIASLACSAAAFAPAQVGRSSTAVQGFENEPGVIAPTGFFDPLGFTDDIDQEKFDQYRTAELKHGRVAQLAVIGYIVPEIFRWGFDIAPGVACADVPNGVAAIDAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKDEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLY |
| Fucoxanthin chlorophyll a/c light-harvesting protein, major type | 2 | 193 | Thalassiosira Pseudonana | MKSVIIASLACSAAAFAPAQVGRSSTAVQGFENEPGVIAPTGFFDPLGFTDDIDQEKFDQYRTAELKHGRVAQLAVIGYIVPEIFRWGFDIAPGVACADVPNGVAAIDAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKDEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLY |
| Fucoxanthin chlorophyll a/c light-harvesting protein, major type | 8 | 193 | Thalassiosira Pseudonana | MKSVIIASLACSAAAFAPAQVGRSSTAVQGFENEPGVIAPTGFFDPLGFTDDIDQEKFDQYRTAELKHGRVAQLAVIGYIVPEIFRWGFDIAPGVACADVPNGVAAIDAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKDEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLY |
| Fucoxanthin chlorophyll a/c light-harvesting protein, major type | 1 | 193 | Thalassiosira Pseudonana | MKSVIIASLACSAAAFAPAQVGRSSTAVQGFENEPGVIAPTGFFDPLGFTDDIDQEKFDQYRTAELKHGRVAQLAVIGYIVPEIFRWGFDIAPGVACADVPNGVAAIDAIPALGWAQIIFAIGAVDVRGWFGNFDIGKPDLKGKDEERALQELQHGRLAMLAILELLRHDSQNLVKPGFDGLDNLITGLPFLY |
| Photosystem II CP43 reaction center protein | C | 470 | Thalassiosira Pseudonana | MKTLYSLRRYYHVETPFNSSIAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMILFEVSHFVPEKPLYEQGFICMQHLATLGYGIGPGGEITSTVPYFAVGVIHLISSAVLGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGALLLVAKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDGWVVSVNNMEDLVGGHIWVGILCIVGGVWHIFTKPFSWARRAFVWSGEAYLSYSLAAISLMGFTASLYAWYNNTAYPSELYGPTGPEASQSQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLCCSHFFLGFFFLIGHWWHSGRARAAAAGFEKGINRANEPVLSMRPI |
| Photosystem II D2 protein | D | 351 | Thalassiosira Pseudonana | MTIAIGQNQERGLFDLVDDWLKRDRFVFVGWSGILLFPTAYLAAGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFIALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGLWTSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thalassiosira Pseudonana | MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL |
| Cytochrome b559 subunit beta | F | 43 | Thalassiosira Pseudonana | MTKNINQPVAYPIFTFRWLAVHGLAIPTVFFLGGITAMQFIQR |
| Photosystem II Psb31 protein domain-containing protein | G | 176 | Thalassiosira Pseudonana | MKIIALCLVASAAAFAPAPVERASTSLNMDRRMATAQIATSAAVLAGLPSLALADGAKSAATQSRARGIYGQRIAALESAVNAGDFGAVAAEKNAFILFNSGAIADKSKKSEAVKQTNAIFAAIRAKDAGALKSAYATYKGANDIKVIVADKESGQGYSNDYDFKARTTLGTIYVR |
| Photosystem II reaction center protein H | H | 66 | Thalassiosira Pseudonana | MALRTRLGEILRPLNAEYGKVVPGWGTTPIMGLTMVLFLVFLLIILQIYNSSLIIENVDVDWANAI |
| Photosystem II reaction center protein I | I | 34 | Thalassiosira Pseudonana | MLTLKILVYTTVIFFVSLFIFGFLSSDPSRNPNR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-03-30 Deposition Author(s): Feng, Y. , Li, Z.H. , Shen, J.R. , Wang, W.D.