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FASTA Sequence PDB Format mmCIF Format
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8IT0

Cryo-em structure of crt-sparta-grna-tdna dimer (conformation-2)

PDB DOI: 10.2210/pdb8it0/pdb

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Thermoflavifilum Thermophilum , Synthetic Construct

Deposited: 2023-03-21
Deposition Author(s): Cui, S. , Ding, W. , Fu, X. , Gao, X. , Mu, Z. , Qin, B. , Shang, K. , Wang, L. , Yu, X. , Zhu, H. , Zhu, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Literature

Cryo-em structure of crt-sparta-grna-tdna dimer (conformation-2)

Cui, S. , Ding, W. , Fu, X. , Gao, X. , Mu, Z. , Qin, B. , Shang, K. , Wang, L. , Yu, X. , Zhu, H. , Zhu, K.

Primary Citation of Related Structures: 8IT0


Proteins
Molecule Chains Sequence Length Organism Sequence
Piwi domain-containing protein A 507 Thermoflavifilum Thermophilum , Synthetic Construct MKELIYIEEPSILFAHGQKCTDPRDGLALFGPLNQIYGIKSGVVGTQKGLQIFKSYLDKIQKPIYNHNNITRPMFPGFEAVFGCKWESQNIVFKEITDEEIRRYLFNASTHKRTYDLVTLFNDKIITANKNDEERVDVWFVIVPEEIYKYCRPNSVLPNELVQTKSLISKSKAKSFRYTPTLFEEFNKKLKEVEKEAKTYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNTFGAPIRDFSKIEGHLAWTISTAAYYKAGGKPWKLGDIRPGVCYLGLVYKKIEKSKNPQNACCAAQMFLDNGDGTVFKGEVGPWYNPEKGEYHLKPKEAKALLTQALESYKEQNKSYPKEVFIHARTRFNDEEWNAFNEVTPKNTNLVGVTITKSKPLKLYKTEGAFPIMRGNAYIVDEKKAFLWTLGFVPKLQSTLSMEVPNPIFIEINKGEAEIQQVLKDILALTKLNYNACIYADGEPVTLRFANKIGEILTASTEIKTPPLAFKYYI
Piwi domain-containing protein E 507 Thermoflavifilum Thermophilum , Synthetic Construct MKELIYIEEPSILFAHGQKCTDPRDGLALFGPLNQIYGIKSGVVGTQKGLQIFKSYLDKIQKPIYNHNNITRPMFPGFEAVFGCKWESQNIVFKEITDEEIRRYLFNASTHKRTYDLVTLFNDKIITANKNDEERVDVWFVIVPEEIYKYCRPNSVLPNELVQTKSLISKSKAKSFRYTPTLFEEFNKKLKEVEKEAKTYNYDAQFHDQLKARLLEHTIPTQILRESTLAWRDFKNTFGAPIRDFSKIEGHLAWTISTAAYYKAGGKPWKLGDIRPGVCYLGLVYKKIEKSKNPQNACCAAQMFLDNGDGTVFKGEVGPWYNPEKGEYHLKPKEAKALLTQALESYKEQNKSYPKEVFIHARTRFNDEEWNAFNEVTPKNTNLVGVTITKSKPLKLYKTEGAFPIMRGNAYIVDEKKAFLWTLGFVPKLQSTLSMEVPNPIFIEINKGEAEIQQVLKDILALTKLNYNACIYADGEPVTLRFANKIGEILTASTEIKTPPLAFKYYI
TIR domain-containing protein B 450 Thermoflavifilum Thermophilum , Synthetic Construct MRNKIFISHATPEDDDFTRWLSLKLIGLGYEVWCDILFLDKGVDFWSTIEKEIRENTCKFLIVSSTAGNKREGVLKELAVATKVKKHLQDDMFIIPLAIDENLSYDDINIEIVRLNAIDFKKSWAKGLQDLLDAFEKQNVPKKPPDHSKSNLLYQQIFLHDKQAIEKEETYDSNWFPIISFPNELRFHRYDWRLPKQFDVRTLAFPAIRYKEYLCTFAWEYDFIHQLPKTETYNGQESIRISTSDILSGRYDTDFIRNYECQRLIVQLINKAFELRMKDKNVREYQMSKTFAYWIEKGKLEKDKFEKIKLVGKQKNKYWHFGISAAGKLYPSPVLMVSSHIIFTMDGINLIKSKSIQHSSRRKQGKNWWNDKWREKLLAFIRFLSDDQNAIYLNVGSEEKILISNKPLKFFGKMSYVTPSEVTLEEESVLADINNFEEDTEDLDELEDIE
TIR domain-containing protein F 450 Thermoflavifilum Thermophilum , Synthetic Construct MRNKIFISHATPEDDDFTRWLSLKLIGLGYEVWCDILFLDKGVDFWSTIEKEIRENTCKFLIVSSTAGNKREGVLKELAVATKVKKHLQDDMFIIPLAIDENLSYDDINIEIVRLNAIDFKKSWAKGLQDLLDAFEKQNVPKKPPDHSKSNLLYQQIFLHDKQAIEKEETYDSNWFPIISFPNELRFHRYDWRLPKQFDVRTLAFPAIRYKEYLCTFAWEYDFIHQLPKTETYNGQESIRISTSDILSGRYDTDFIRNYECQRLIVQLINKAFELRMKDKNVREYQMSKTFAYWIEKGKLEKDKFEKIKLVGKQKNKYWHFGISAAGKLYPSPVLMVSSHIIFTMDGINLIKSKSIQHSSRRKQGKNWWNDKWREKLLAFIRFLSDDQNAIYLNVGSEEKILISNKPLKFFGKMSYVTPSEVTLEEESVLADINNFEEDTEDLDELEDIE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (45-mer) d 45 NA AAACGACGGCCAGTGCCAAGCAAACTATACAACCTACTACCTCAT
DNA (45-mer) h 45 NA AAACGACGGCCAGTGCCAAGCAAACTATACAACCTACTACCTCAT
RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3') c 21 NA UGAGGUAGUAGGUUGUAUAGU
RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3') g 21 NA UGAGGUAGUAGGUUGUAUAGU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-03-21
Deposition Author(s): Cui, S. , Ding, W. , Fu, X. , Gao, X. , Mu, Z. , Qin, B. , Shang, K. , Wang, L. , Yu, X. , Zhu, H. , Zhu, K.