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8IKD

Structure of dna binding domain of mcrbc endonuclease bound to dna: y41f-l68y double mutant

PDB DOI: 10.2210/pdb8ikd/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2023-02-28
Deposition Author(s): Adhav, V.A. , Saikrishnan, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

8ikd
Literature

Structure of dna binding domain of mcrbc endonuclease bound to dna: y41f-l68y double mutant

Adhav, V.A. , Saikrishnan, K.

Primary Citation of Related Structures: 8IKD


Proteins
Molecule Chains Sequence Length Organism Sequence
Type IV methyl-directed restriction enzyme EcoKMcrB subunit A 170 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGFGNFTSIPWFAFLGEGQEASNGIYPVIYYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPLEGHHHHHH
Type IV methyl-directed restriction enzyme EcoKMcrB subunit B 170 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGFGNFTSIPWFAFLGEGQEASNGIYPVIYYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPLEGHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3') c 13 NA TGAGACCGGTAGC
DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3') d 13 NA AGCTACCGGTCTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-02-28
Deposition Author(s): Adhav, V.A. , Saikrishnan, K.