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8IHM
Eaf3 chd domain bound to the nucleosome
PDB DOI: 10.2210/pdb8ihm/pdb
Classification: TRANSCRIPTION Organism(s): Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603
Deposited: 2023-02-23 Deposition Author(s): Gang, C. , Zhang, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.58 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3 | A | 135 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 | E | 135 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 102 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 102 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A | C | 129 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
| Histone H2A | G | 129 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
| Histone H2B | D | 122 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B | H | 122 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Rco1-ABR | M | 18 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | RRKIITSEGIERSFKNEH |
| Chromatin modification-related protein EAF3 | N | 119 | Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 | RCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAKEAKKSLLEQQKKKKL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (164-MER) | i | 164 | NA | TCGCCCTTACTGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG |
| DNA (165-MER) | j | 165 | NA | CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCAGTAAGGGCGAC |
Experimental Data
Method: ELECTRON MICROSCOPY