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FASTA Sequence PDB Format mmCIF Format
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8I23

Clostridium thermocellum rna polymerase transcription open complex with sigi1 and its promoter

PDB DOI: 10.2210/pdb8i23/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct

Deposited: 2023-01-13
Deposition Author(s): Feng, Y. , Li, D. , Li, J. , Zhang, H. , Zhu, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å

8i23
Literature

Clostridium thermocellum rna polymerase transcription open complex with sigi1 and its promoter

Feng, Y. , Li, D. , Li, J. , Zhang, H. , Zhu, P.

Primary Citation of Related Structures: 8I23


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 315 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct MIEIEKPKIECVVCSEDNRYGKFVVEPLERGYGITLGNSLRRILLSSLPGVAVTSIKIDGVLHEFSTIPGVIEDVTEIILNIKELSLNFHGEGPKVIYIDAEGEGEVKAKDIKADADVEILNPEHKIATLSGDHRLYMEMTIDKGRGYVSAEKNKHPGQPIGVIPVDSIFTPVHKVNYTVENTRVGQVTDYDKLTLEVWTNGSIKPDEAISLGAKILSEHLNLFIDLSDNAKNAEIMVEKEETKKEKVLEMTIEELDLSVRSYNCLKRAGINTVEDLISRTEEDMMKVRNLGRKSLEEVVNKLKALGLSLAPSED
DNA-directed RNA polymerase subunit alpha B 315 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct MIEIEKPKIECVVCSEDNRYGKFVVEPLERGYGITLGNSLRRILLSSLPGVAVTSIKIDGVLHEFSTIPGVIEDVTEIILNIKELSLNFHGEGPKVIYIDAEGEGEVKAKDIKADADVEILNPEHKIATLSGDHRLYMEMTIDKGRGYVSAEKNKHPGQPIGVIPVDSIFTPVHKVNYTVENTRVGQVTDYDKLTLEVWTNGSIKPDEAISLGAKILSEHLNLFIDLSDNAKNAEIMVEKEETKKEKVLEMTIEELDLSVRSYNCLKRAGINTVEDLISRTEEDMMKVRNLGRKSLEEVVNKLKALGLSLAPSED
DNA-directed RNA polymerase subunit beta C 1250 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKEGFKEVFKDVNPITDYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKETGEVKEQEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAMKIDKAGKQLFSNTVIPNRGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDSTKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSIAARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTVILRVDGKNVKVIGNDMVDIKRYVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKALQERIDDLIPKHITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIETPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEVDPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIEYRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVATPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKVYSEEQEEIAIKESVEDDLEELNVNIEGREDEVNFNEFNDIGEEITDEDLEVEDFDLQDLNDDDINPDDTIDAELDDNLFDDDFDDTFDDDDL
DNA-directed RNA polymerase subunit beta' D 1188 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct MGSSHHHHHHHHHHSGSGSGSGSGFELNNFDSIRIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWECHCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEKILYFAAYVVIDPGQTPLSKKQILSEKEYRDSLEKFGPKFRAGMGAEAVRELLQEINLDELSAELREEIKQSTGQKRVRAIKRLEVVEAFRQSQNKPEWMILDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKEMALELFKPFVMKKLVNDGLAHNIKSAKRMVERVRNEVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPVLVEGRALKLHPLVCTAYNADFDGDQMAIHVPLSAEAQAEARFLMLSANNLLKPQDGKPVAVPTQDMVLGSYYLTILKEGAKGEGRVFTSMDEAVMAYDNGEIELHSKIKVRMKRVVDGVEKSKIIETTLGRLIFNEAIPQDLGFVDRSDPDKIFDLEVDFLVGKNELKKIIDKSIKVHGTTKTAILLDKIKELGFKYSTKGAITISISDMVIPEVKAKYIKETEEKIEKITKQYKRGLISDEERYNSVIAAWTEASENITRALINNLDRFNPVYMMSQSGARGNINQIKQLAGMRGLMADTSGKTIEFPIKANFREGLTVMEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTRKGIEVTDIKDGNEVIEELSERIIGRYPVGNIVHPETGEIIVEAGRMITDQDAEKIVKAGIKKVRIRSVLTCHSEYGVCAKCYGANLATGEECNVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGLAIISEIKGTVKISETKKKREIVVTSEDGETRSYLIPYGSRIKVSDGDQVEAGDELTEGSVNPHDILKIKGVEAVQTYLVHEVQKVYRMQGVDINDKHIEVIVRQMLRKVKVEDPGDTSLLPGGLVDVFDFEEENAKAIAEGKKPAVAKRALLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKENVIIGKLIPAGTGMSRYKDITISTVTE
DNA-directed RNA polymerase subunit omega E 78 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct MKEKKERVSSMIEPSINSLLEKVDSRYTLVVATAKRARQLTDGANKLTNCESDKPVTVAINEINENKITYIRTKSGIK
RNA polymerase sigma factor SigI1 F 257 Acetivibrio Thermocellus Dsm 1313 , Acetivibrio Thermocellus Dsm1313 , Synthetic Construct SMEVRKINTHNREKKLDDIVYDDFISTLRQIKEGNHQLREEFISEYKPFILKVTSNATGKYIDTRNSDEFSIALSAFNEAIDKFDIEKGYNFFLFSEQVIRRRLIDYSRSNKDDKEYPFSFFDDEYFYNNEKLLSKSYIGFEDIEAREDIEELKKKLQEFGITFLDLVLNVPKHRDSRQLCIRLAKMLAEDEQMYNALMKNKNIPRNELKKKAKVHGRTIGNNRKYIIALCLIFRSNLNLSKRYLEYYTMDGESDLI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (80-mer) o 80 NA AGAGCCGATATTAATCGATAATATACACAAAAAAAGCAGATGTATACGAAGTAATCTACTGAAGGGAGAATGATCTGGTG
DNA (80-mer) p 80 NA CACCAGATCATTCTCCCTAGTCATCTAAACTTCGTATACATCTGCTTTTTTTGTGTATATTATCGATTAATATCGGCTCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-01-13
Deposition Author(s): Feng, Y. , Li, D. , Li, J. , Zhang, H. , Zhu, P.