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FASTA Sequence PDB Format mmCIF Format
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8HUD

Cryo-em structure of the evcas9-sgrna-target dna ternary complex

PDB DOI: 10.2210/pdb8hud/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Eubacterium Ventriosum Atcc 27560 , Synthetic Construct

Deposited: 2022-12-23
Deposition Author(s): Chen, W. , Gao, Y. , Ji, Q. , Su, M. , Tang, N. , Wang, Z. , Wu, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.43 Å

8hud
Literature

Cryo-em structure of the evcas9-sgrna-target dna ternary complex

Chen, W. , Gao, Y. , Ji, Q. , Su, M. , Tang, N. , Wang, Z. , Wu, Z.

Primary Citation of Related Structures: 8HUD


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1107 Eubacterium Ventriosum Atcc 27560 , Synthetic Construct MGYTVGLDIGVASVGVAVLDENDNIVEAVSNIFDEADTSNNKVRRTLREGRRTKRRQKTRIEDFKQLWETSGYIIPHKLHLNIIELRNKGLTELLSLDELYCVLLSMLKHRGISYLEDADDGEKGNAYKKGLAFNEKQLKEKMPCEIQLERMKKYGKYHGEFIIEINDEKEYQSNVFTTKAYKKELEKIFETQRCNGNKINTKFIKKYMEIYERKREYYIGPGNEKSRTDYGIYTTRTDEEGNFIDEKNIFGKLIGKCSVYPEEYRASSASYTAQEFNLLNDLNNLKINNEKLTEFQKKEIVEIIKDASSVNMRKIIKKVIDEDIEQYSGARIDKKGKEIYHTFEIYRKLKKELKTINVDIDSFTREELDKTMDILTLNTERESIVKAFDEQKFVYEENLIKKLIEFRKNNQRLFSGWHSFSYKAMLQLIPVMYKEPKEQMQLLTEMNVFKSKKEKYVNYKYIPENEVVKEIYNPVVVKSIRTTVKILNALIKKYGYPESVVIEMPRDKNSDDEKEKIDMNQKKNQEEYEKILNKIYDEKGIEITNKDYKKQKKLVLKLKLWNEQEGLCLYSGKKIAIEDLLNHPEFFEIDHIIPKSISLDDSRSNKVLVYKTENSIKENDTPYHYLTRINGKWGFDEYKANVLELRRRGKIDDKKVNNLLCMEDITKIDVVKGFINRNLNDTRYASRVVLNEMQSFFESRKYCNTKVKVIRGSLTYQMRQDLHLKKNREESYSHHAVDAMLIAFSQKGYEAYRKIQKDCYDFETGEILDKEKWNKYIDDDEFDDILYKERMNEIRKKIIEAEEKVKYNYKIDKKCNRGLCNQTIYGTREKDGKIHKISSYNIYDDKECNSLKKMINSGKGSDLLMYNNDPKTYRDMLKILETYSSEKNPFVAYNKETGDYFRKYSKNHNGPKVEKVKYYSGQINSCIDISHKYGHAKNSKKVVLVSLNPYRTDVYYDNDTGKYYLVGVKYNHIKCVGNKYVIDSETYNELLRKEGVLNSDENLEDLNSKNITYKFSLYKNDIIQYEKGGEYYTERFLSRIKEQKNLIETKPINKPNFQRKNKKGEWENTRNQIALAKTKYVGKLVTDVLGNCYIVNMEKFSLVVDK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 75 NA GGUAAUCGCUCUCCUCCGGCGAUUUUAGUACCUGAGAAAUCAGAUCUACUAAAACAAGGCUUUAUGCCGAAAUCA
Target DNA strand c 28 NA CGCCACGTCGCCGGAGGAGAGCGATTAC
Non-target DNA strand d 8 NA ACGTGGCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-23
Deposition Author(s): Chen, W. , Gao, Y. , Ji, Q. , Su, M. , Tang, N. , Wang, Z. , Wu, Z.