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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8HRD

Crystal structure of the receptor binding domain of sars-cov-2 delta variant in complex with imcas74 fab and w14 fab

PDB DOI: 10.2210/pdb8hrd/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-12-15
Deposition Author(s): Han, P. , Wu, L.L. , Zhao, R.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.86 Å

8hrd
Literature

Crystal structure of the receptor binding domain of sars-cov-2 delta variant in complex with imcas74 fab and w14 fab

Han, P. , Wu, L.L. , Zhao, R.C.

Primary Citation of Related Structures: 8HRD


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 B 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 K 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
Spike protein S1 T 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF
IMCAS74 Fab heavy chain O 235 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAQLKKPGESLKISCKGSGYNFSRYWIAWVRHMPGKGLEVMGIIYPDDSDTRYSPSVRGQVTISADKSTSIVYLQWSSLKASDTGIYYCARFGAGMTGMPRYFDTTRWFDPWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
IMCAS74 Fab heavy chain C 235 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAQLKKPGESLKISCKGSGYNFSRYWIAWVRHMPGKGLEVMGIIYPDDSDTRYSPSVRGQVTISADKSTSIVYLQWSSLKASDTGIYYCARFGAGMTGMPRYFDTTRWFDPWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
IMCAS74 Fab heavy chain L 235 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAQLKKPGESLKISCKGSGYNFSRYWIAWVRHMPGKGLEVMGIIYPDDSDTRYSPSVRGQVTISADKSTSIVYLQWSSLKASDTGIYYCARFGAGMTGMPRYFDTTRWFDPWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
IMCAS74 Fab heavy chain W 235 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAQLKKPGESLKISCKGSGYNFSRYWIAWVRHMPGKGLEVMGIIYPDDSDTRYSPSVRGQVTISADKSTSIVYLQWSSLKASDTGIYYCARFGAGMTGMPRYFDTTRWFDPWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
IMCAS74 Fab light chain P 217 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DQSVLTQPPSVSGAPGQRVTISCLGGSSNIGAGYDVHWYQHLPGAAPKLLISGNSNRPSGVPARFSGSKSGTSASLAITGLQAEDEADYYCQSYDNDLSQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
IMCAS74 Fab light chain E 217 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DQSVLTQPPSVSGAPGQRVTISCLGGSSNIGAGYDVHWYQHLPGAAPKLLISGNSNRPSGVPARFSGSKSGTSASLAITGLQAEDEADYYCQSYDNDLSQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
IMCAS74 Fab light chain M 217 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DQSVLTQPPSVSGAPGQRVTISCLGGSSNIGAGYDVHWYQHLPGAAPKLLISGNSNRPSGVPARFSGSKSGTSASLAITGLQAEDEADYYCQSYDNDLSQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
IMCAS74 Fab light chain X 217 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DQSVLTQPPSVSGAPGQRVTISCLGGSSNIGAGYDVHWYQHLPGAAPKLLISGNSNRPSGVPARFSGSKSGTSASLAITGLQAEDEADYYCQSYDNDLSQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
W14 Fab heavy chain D 234 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQESGPGLVKPSETLSLTCTVSSGSISGTSYYWDWIRQPPGKGLEWIGTIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSPVTAAGTAVYYCARRTFYYDRSGQKVVEPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
W14 Fab heavy chain G 234 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQESGPGLVKPSETLSLTCTVSSGSISGTSYYWDWIRQPPGKGLEWIGTIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSPVTAAGTAVYYCARRTFYYDRSGQKVVEPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
W14 Fab heavy chain N 234 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQESGPGLVKPSETLSLTCTVSSGSISGTSYYWDWIRQPPGKGLEWIGTIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSPVTAAGTAVYYCARRTFYYDRSGQKVVEPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
W14 Fab heavy chain Y 234 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQESGPGLVKPSETLSLTCTVSSGSISGTSYYWDWIRQPPGKGLEWIGTIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSPVTAAGTAVYYCARRTFYYDRSGQKVVEPFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
W14 Fab light chain F 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYEASSLENGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
W14 Fab light chain H 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYEASSLENGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
W14 Fab light chain Q 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYEASSLENGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
W14 Fab light chain Z 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYEASSLENGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-12-15
Deposition Author(s): Han, P. , Wu, L.L. , Zhao, R.C.