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8HQY

Cryo-em structure of ssx1 bound to the h2ak119ub nucleosome at a resolution of 3.05 angstrom

PDB DOI: 10.2210/pdb8hqy/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo Sapiens

Deposited: 2022-12-14
Deposition Author(s): Ai, H.S. , Guochao, C. , Liu, L. , Man, P. , Zebin, T. , Ziyu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.05 Å

8hqy
Literature

Cryo-em structure of ssx1 bound to the h2ak119ub nucleosome at a resolution of 3.05 angstrom

Ai, H.S. , Guochao, C. , Liu, L. , Man, P. , Zebin, T. , Ziyu, X.

Primary Citation of Related Structures: 8HQY


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 97 Homo Sapiens PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGER
Histone H3 E 97 Homo Sapiens PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLSAIHAKRVTIMPKDIQLARRIRGER
Histone H4 (Fragment) B 83 Homo Sapiens RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 1-B/E C 107 Homo Sapiens KAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKC
Histone H2B type 1-K D 91 Homo Sapiens KESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B type 1-K H 91 Homo Sapiens KESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H4 F 81 Homo Sapiens VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 1-B/E G 106 Homo Sapiens KAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Protein SSX2 S 23 Homo Sapiens HAWTHRLRERKQLVIYEEISDPE
Polyubiquitin-B (Fragment) U 74 Homo Sapiens MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (136-MER) j 136 NA TATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCAT
DNA (137-MER) i 136 NA ATGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-14
Deposition Author(s): Ai, H.S. , Guochao, C. , Liu, L. , Man, P. , Zebin, T. , Ziyu, X.