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8HPU

Cryo-em structure of sars-cov-2 omicron ba.4 rbd in complex with fab l4.65 and l5.34

PDB DOI: 10.2210/pdb8hpu/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Salmonella Enterica , Gammaretrovirus

Deposited: 2022-12-13
Deposition Author(s): Gao, G.F. , Liu, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.56 Å

Literature

Cryo-em structure of sars-cov-2 omicron ba.4 rbd in complex with fab l4.65 and l5.34

Gao, G.F. , Liu, S.

Primary Citation of Related Structures: 8HPU


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S2' A 194 Salmonella Enterica , Gammaretrovirus NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP
fab L4.65 H 231 Salmonella Enterica , Gammaretrovirus QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVAWIRQPPGKALEWLALIYWDNDKRSSPSLNNRLTITKDTSKNQVVLTMTNMDPEDTATYYCAHFFSHYDSSNYYYGSWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
fab L4.65 L 215 Salmonella Enterica , Gammaretrovirus EIVLTQSPGTLSLSPGERATLSCRASQSFDSRYLGWYQQKSGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQFGDSPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
fab L5.34 M 224 Salmonella Enterica , Gammaretrovirus VQLVESGGGLVQPGGSLRLSCAASEITVSSNYMNWVRQAPGKGLEWVSVVYPGGSTFYTDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARESGGFPLAEGAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
fab L5.34 N 216 Salmonella Enterica , Gammaretrovirus DIQMTQSPSSLSASVGDRVSITCRASQSISTHLHWYQQKPGKAPKLLISAASTLQSGVPSRFSGSGSGTDFTLTITSLQPEDFATYYCQQSYSTPRGLSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-13
Deposition Author(s): Gao, G.F. , Liu, S.