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FASTA Sequence PDB Format mmCIF Format
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8HMY

Cryo-em structure of the human pre-catalytic tsen/pre-trna complex

PDB DOI: 10.2210/pdb8hmy/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-12-06
Deposition Author(s): Shi, Y. , Yang, F. , Zhan, X. , Zhang, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.94 Å

8hmy
Literature

Cryo-em structure of the human pre-catalytic tsen/pre-trna complex

Shi, Y. , Yang, F. , Zhan, X. , Zhang, X.

Primary Citation of Related Structures: 8HMY


Proteins
Molecule Chains Sequence Length Organism Sequence
tRNA-splicing endonuclease subunit Sen2 A 485 Homo Sapiens , Synthetic Construct MASDYKDDDDKASDEVDAGTMAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQLYGKGYFGKGILSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVREDASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYAASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL
tRNA-splicing endonuclease subunit Sen34 B 330 Homo Sapiens , Synthetic Construct MASDYKDDDDKASDEVDAGTMLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPRSALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFAAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVVYTSLQWASLQ
tRNA-splicing endonuclease subunit Sen54 C 546 Homo Sapiens , Synthetic Construct MASDYKDDDDKASDEVDAGTMEPEPEPAAVEVPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRVERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPSSVLSPYERQLNLDASVQHLEDGDGKRKRSSSSPRSINKKAKALDNSLQPKSLAASSPPPCSQPSQCPEEKPQESSPMKGPGGPFQLLGSLGPSPGPAREGVGCSWESGRAENGVTGAGKRRWNFEQISFPNMASDSRHTLLRAPAPELLPANVAGRETDAESWCQKLNQRKEKLSRREREHHAEAAQFQEDVNADPEVQRCSSWREYKELLQRRQVQRSQRRAPHLWGQPVTPLLSPGQASSPAVVLQHISVLQTTHLPDGGARLLEKSGGLEIIFDVYQADAVATFRKNNPGKPYARMCISGFDEPVPDLCSLKRLSYQSGDVPLIFALVDHGDISFYSFRDFTLPQDVGH
Chromosome 1 open reading frame 19, isoform CRA_a D 213 Homo Sapiens , Synthetic Construct MASSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKGSAAAMEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQVSFENISLRR
Polyribonucleotide 5'-hydroxyl-kinase Clp1 E 445 Homo Sapiens , Synthetic Construct MASDYKDDDDKASDEVDAGTMGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMDLK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Pre-tRNA t 114 NA UAAUACGACUCACUAUAGGGGGCUCUGUGGCGCAAUGGAUAGCGCAUUGGACUUCUAGUGACGAAUAGAGCAAUUCAAAGGUUGUGGGUUCGAAUCCCACCAGAGUCGGAUAUC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-06
Deposition Author(s): Shi, Y. , Yang, F. , Zhan, X. , Zhang, X.