PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8HLB

Cryo-em structure of biparatopic antibody bp109-92 in complex with tnfr2

PDB DOI: 10.2210/pdb8hlb/pdb

Classification: IMMUNE SYSTEM
Organism(s): Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica

Deposited: 2022-11-29
Deposition Author(s): Akiba, H. , Fujita, J. , Ise, T. , Kamada, H. , Kato, T. , Miyata, T. , Nagata, S. , Namba, K. , Nishiyama, K. , Ohno, H. , Tsumoto, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.63 Å

8hlb
Literature

Cryo-em structure of biparatopic antibody bp109-92 in complex with tnfr2

Akiba, H. , Fujita, J. , Ise, T. , Kamada, H. , Kato, T. , Miyata, T. , Nagata, S. , Namba, K. , Nishiyama, K. , Ohno, H. , Tsumoto, K.

Primary Citation of Related Structures: 8HLB


Proteins
Molecule Chains Sequence Length Organism Sequence
Tumor necrosis factor receptor superfamily member 1B,Maltose/maltodextrin-binding periplasmic protein A 550 Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica LPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELVKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQGHHHHHH
TR109 heavy chain B 236 Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica QVQLKESGPGLVAPSQSLSITCTVSGFSLTVYGVNWVRQPPGKGLEWLGMIWGDGSTAYNSALKSRLTITKDNSKTQVFLKMNSLQTDDTARYYCARDGRRYALDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCFNTHTCPPCPAPELLG
TR109 light chain C 218 Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica DIVLTQSPTSLAVSLGQRATISCRASESVDSYGDSFLHWYQQKPGQPPILLIYRASNLDSGIPARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
TR92 heavy chain D 238 Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica KVQLQQSGAELVKPGASVKLSCKASGYTFTESIIHWVKQRSGQGLEWIGWFYPGSDNINYNEKFKDKATLTADKSSSTVYMELTRLTSEDSAVYFCASHEGPYVYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLG
TR92 light chain E 214 Helicobacter Pylori Bacteriophage Khp30 , Salmonella Enterica DIVMTQSHKFMSTSVGDRVSITCKASQDVSTAVAWYQQKPGQSPKLLIYWTSTRHTGVPDRFTGSGSGTDYTLTISSVQAEDLALYYCQHHYSTPYTFGGGTKLEIQRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-11-29
Deposition Author(s): Akiba, H. , Fujita, J. , Ise, T. , Kamada, H. , Kato, T. , Miyata, T. , Nagata, S. , Namba, K. , Nishiyama, K. , Ohno, H. , Tsumoto, K.