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8HGM
Structure of sars-cov-2 spike rbd in complex with neutralizing antibody niv-11
PDB DOI: 10.2210/pdb8hgm/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2022-11-15 Deposition Author(s): Adachi, Y. , Anraku, Y. , Fukuhara, H. , Fukushi, S. , Hashiguchi, T. , Higuchi, Y. , Hoshino, A. , Kita, S. , Kotaki, R. , Kuroda, D. , Kuroda, Y. , Maeda, K. , Maenaka, K. , Moriyama, S. , Muranishi, S. , Nakamura-Uchiyama, F. , Onodera, T. , Someya, T. , Suzuki, T. , Takahashi, Y. , Tonouchi, K. , Yamamoto, T. , Yumoto, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Structure of sars-cov-2 spike rbd in complex with neutralizing antibody niv-11
Adachi, Y. , Anraku, Y. , Fukuhara, H. , Fukushi, S. , Hashiguchi, T. , Higuchi, Y. , Hoshino, A. , Kita, S. , Kotaki, R. , Kuroda, D. , Kuroda, Y. , Maeda, K. , Maenaka, K. , Moriyama, S. , Muranishi, S. , Nakamura-Uchiyama, F. , Onodera, T. , Someya, T. , Suzuki, T. , Takahashi, Y. , Tonouchi, K. , Yamamoto, T. , Yumoto, K.
Primary Citation of Related Structures: 8HGM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike glycoprotein | B | 1288 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK |
| NIV-11 Fab heavy chain | C | 223 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | QLVQSGPEVKKPGTSVKVSCKASGFTFYYSAVQWVRQARGQRLEWLGWMAVGSGKANYAQKFQERLTLTRDMSTSTAYMELSSLRSEDTAVYYCAAPNCTGGSCYDGFNLWGQGTVVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS |
| NIV-11 Fab light chain | D | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | EIVLTQSPGTLSLSPGDRAILSCRASQTVNSNYLAWYQQKPGQAPRLLIYGTSSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPWLFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-11-15 Deposition Author(s): Adachi, Y. , Anraku, Y. , Fukuhara, H. , Fukushi, S. , Hashiguchi, T. , Higuchi, Y. , Hoshino, A. , Kita, S. , Kotaki, R. , Kuroda, D. , Kuroda, Y. , Maeda, K. , Maenaka, K. , Moriyama, S. , Muranishi, S. , Nakamura-Uchiyama, F. , Onodera, T. , Someya, T. , Suzuki, T. , Takahashi, Y. , Tonouchi, K. , Yamamoto, T. , Yumoto, K.