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8HC6

Sars-cov-2 omicron ba.1 spike trimer (6p) in complex with yb9-258 fab, focused refinement of fab region

PDB DOI: 10.2210/pdb8hc6/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-11-01
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Su, M. , Xiong, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.69 Å

8hc6
Literature

Sars-cov-2 omicron ba.1 spike trimer (6p) in complex with yb9-258 fab, focused refinement of fab region

Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Su, M. , Xiong, X.

Primary Citation of Related Structures: 8HC6


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 C 267 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 PTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDIT
Heavy chain of YB9-258 Fab H 220 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLIQPGGSLRLSCAASGLTVSSNYMHWVRQAPGKGLEWVSVLYAGGSAFYADSVKGRFTISRNNSKNTLYLQMNSLRAEDTAIYYCARGLGDYLDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Light chain of YB9-258 L 215 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSVSASVGDRVTITCRASQGIGSWLAWYQQKPGKAPQLLIYAASTLQSGVPPRFSGSGSGTDFTLTITSLQPEDFASYYCQQANSVLALTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S1 B 273 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-11-01
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Su, M. , Xiong, X.