8H5U
Crystal structure of sars-cov-2 spike receptor-binding domain in complex with neutralizing nanobody nb-021
PDB DOI: 10.2210/pdb8h5u/pdb
Classification: VIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos
Deposited: 2022-10-13 Deposition Author(s): Lin, S. , Lu, G.W. , Yang, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.401 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S1 | A | 218 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | VQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNK |
| Spike protein S1 | C | 218 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | VQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNK |
| Nanobody Nb-021 | B | 119 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | EVQVVESGGGLVQPGGSLRLSCAASGTGSTFSTYAMGWYRQAPGNQHERVAIIDSVGNTNYPDSVKGRFTISRDNAKNTGYLQMNSLKSEDTAVYYCNLGTIWGQGTQVTVSSHHHHHH |
| Nanobody Nb-021 | D | 119 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | EVQVVESGGGLVQPGGSLRLSCAASGTGSTFSTYAMGWYRQAPGNQHERVAIIDSVGNTNYPDSVKGRFTISRDNAKNTGYLQMNSLKSEDTAVYYCNLGTIWGQGTQVTVSSHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION