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FASTA Sequence PDB Format mmCIF Format
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8H3Y

Bacteroide fragilis toxin in complex with nanobody 327

PDB DOI: 10.2210/pdb8h3y/pdb

Classification: TOXIN
Organism(s): Clostridium Hiranonis , Pyrobaculum Ferrireducens

Deposited: 2022-10-09
Deposition Author(s): Guo, Y. , Wen, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å

8h3y
Literature

Bacteroide fragilis toxin in complex with nanobody 327

Guo, Y. , Wen, Y.

Primary Citation of Related Structures: 8H3Y


Proteins
Molecule Chains Sequence Length Organism Sequence
Fragilysin A 397 Clostridium Hiranonis , Pyrobaculum Ferrireducens MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Fragilysin B 397 Clostridium Hiranonis , Pyrobaculum Ferrireducens MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Fragilysin C 397 Clostridium Hiranonis , Pyrobaculum Ferrireducens MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Nanobody 327 D 127 Clostridium Hiranonis , Pyrobaculum Ferrireducens QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Nanobody 327 E 127 Clostridium Hiranonis , Pyrobaculum Ferrireducens QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Nanobody 327 F 127 Clostridium Hiranonis , Pyrobaculum Ferrireducens QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-10-09
Deposition Author(s): Guo, Y. , Wen, Y.