PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8H3Y

Bacteroide fragilis toxin in complex with nanobody 327

PDB DOI: 10.2210/pdb8h3y/pdb

Classification: TOXIN
Organism(s): Bacteroides Fragilis , Vicugna Pacos

Deposited: 2022-10-09
Deposition Author(s): Guo, Y. , Wen, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å

8h3y
Literature

Bacteroide fragilis toxin in complex with nanobody 327

Guo, Y. , Wen, Y.

Primary Citation of Related Structures: 8H3Y


Proteins
Molecule Chains Sequence Length Organism Sequence
Fragilysin A 397 Bacteroides Fragilis , Vicugna Pacos MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Fragilysin B 397 Bacteroides Fragilis , Vicugna Pacos MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Fragilysin C 397 Bacteroides Fragilis , Vicugna Pacos MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECDYINDYIKTPQVPHGITESQTRAVPSEPKTVYVICLRENGSTIYPNEVSAQMQDAANSVYAVHGLKRYVNFHFVLYTTEYSCPSGDAKEGLEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNVNTASDFEASGMSTTQLMYPGVMAHELGHILGAEHTDNSKDLMYATFTGYLSHLSEKNMDIIAKNLGWEAADGD
Nanobody 327 D 127 Bacteroides Fragilis , Vicugna Pacos QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Nanobody 327 E 127 Bacteroides Fragilis , Vicugna Pacos QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Nanobody 327 F 127 Bacteroides Fragilis , Vicugna Pacos QVQLQESGGGLVQAGGSLRLSCTYSGQTFSAWAMGWFRQAPGKERETVATINWNGERTQYADAVKGRFTISRDNAKDTVYLEMNSLKPEDTAVYYCASMMGTYYSGSPKNWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-10-09
Deposition Author(s): Guo, Y. , Wen, Y.