8H3V
Cryo-em structure of the full transcription activation complex ntca-ntcb-tac
PDB DOI: 10.2210/pdb8h3v/pdb
Classification: TRANSCRIPTION Organism(s): Anabaena , Synthetic Construct
Deposited: 2022-10-09 Deposition Author(s): Chen, Z.P. , Han, S.J. , Jiang, Y.L. , Kong, W.W. , Shen, L.Q. , Wu, X.X. , Yang, F. , You, L.L. , Zhang, Y. , Zhou, C.Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.5 Å
Cryo-em structure of the full transcription activation complex ntca-ntcb-tac
Chen, Z.P. , Han, S.J. , Jiang, Y.L. , Kong, W.W. , Shen, L.Q. , Wu, X.X. , Yang, F. , You, L.L. , Zhang, Y. , Zhou, C.Z.
Primary Citation of Related Structures: 8H3V
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (125-MER) | 1 | 125 | NA | GTTAAGTGTAATGCAAAAAACGCATATTCTCTATGCAAAAAACGCATTAATACGAGAATTTTGTAGCTACTTATACAAAATTCAGGAAAATTTTTCTGTATAATGGGAGCTGTCACGGATGCAGG |
| DNA (125-MER) | 2 | 125 | NA | CCTGCATCCGTGAGTCGAGGGTAATAACAGAAAAATTTTCCTGAATTTTGTATAAGTAGCTACAAAATTCTCGTATTAATGCGTTTTTTGCATAGAGAATATGCGTTTTTTGCATTACACTTAAC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NtcA | X | 223 | Anabaena , Synthetic Construct | MIVTQDKALANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSRQFT |
| NtcA | Y | 223 | Anabaena , Synthetic Construct | MIVTQDKALANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSRQFT |
| DNA-directed RNA polymerase subunit beta | A | 1132 | Anabaena , Synthetic Construct | MVSSKKFNQVDKGRGMISENYIEPAFLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKLELHFLGHNYKLKEPKYSVEEAKRRDSTYAVQMYVPTRLLNKETGDIKEQEVFIGDLPLMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQYGFLETPFRPVENGRVRFDQPAAYMTADEEDDLRVAPGDIPVDENGYIIGPQVPVRYRQEFSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAVPLLKPERPLVGTGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVSGQLPTASGKSTDNGQLTSQKGQEIRYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSSTEGGELALGQNIVVAYMPWEGYNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDEQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPYLPDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEMYGEESSRRIVHGKLQEARDETGKDWVYNPDDPGKIMVYDGRTGEAFDRPVTIGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVHKVETQADGSSLDVEVDLMADQLARRTPPRPTYESLSRESLDDDE |
| DNA-directed RNA polymerase subunit beta' | B | 1350 | Anabaena , Synthetic Construct | MIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDDLMVPPSKRSLLEAAEEEIRATEVRYQRGEITEVERFQKVIDTWNGTSEALKDEVVTHFKQTNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPMTEGSKTLIKLSTRLLGRVVGEDVIHPKTKEVIAPRNTPISDDLAKEIEKAGVAEVVVRSPLTCEAARSVCQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKMDGTIKLPRKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIHVTQGSTIYIVDGQQVKKGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTDRQGNTTTTAARGGLIWILSGEVYNLPPGAELVVKNGDRVETNGVLAETKLTTIHGGVVRLPEATPGKSTREIEIITASVVLDQATVTVQSSQGRNNYLITTGNNQVFNLRATPGTKVQNGQVVAELIDDRYRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQYVEAGTEVVKDIFCQNSGVVEVTQKNDILREVVVKPGELLMVDDPEAVIGRDNTLLQPGEELLGQVATELRYIQYVESPEGPALLSRPVVEFAVPSNPDVPSTTSVSQQTGRSIQMRAVQRLPYKDSERVKSVEGVELLRTQLVLEIEQEGEQEHNASPLAADIELIPDLEDADVQRLQLVILESLVLRRDIAADATQGSTQTSLEVKDGDTIVPGSVVARTQILSKEGGIVRGVQKGSEAVRRCLVLRHSDMATLNISAKPKVKAGDLIVAGTELAPGIFAEESGQIVGVKNAGESTTTQDAALSTQNYAVTIRAGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKRGGEVKVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYDEPGMLEDYSTLETTSVLDETDDPLDMVLDDRTARAYNLDSPGLAETGFNNRRSILDDDELIADEIHDLVEAEVEVDDEVDDDYEDDDEDDDDYED |
| DNA-directed RNA polymerase subunit alpha | C | 236 | Anabaena , Synthetic Construct | MVAQFQIECVESNTEESRNHYSKFILEPLERGQGTTVGNALRRVLLSNLEGTAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLEPTDTN |
| DNA-directed RNA polymerase subunit alpha | D | 236 | Anabaena , Synthetic Construct | MVAQFQIECVESNTEESRNHYSKFILEPLERGQGTTVGNALRRVLLSNLEGTAVTAVRIAGVSHEFATVPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLEPTDTN |
| DNA-directed RNA polymerase subunit gamma | E | 625 | Anabaena , Synthetic Construct | MRPAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQLQGVEVGIGAEALLRLLADINLEQEAESLREEIGSAKGQKRAKLIKRLRVIDNFIATGSKPEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLEEVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDDVIMAFQQEQIDLHAYVYVRFDGDVESDQPDTEPVKVTTNEDGSRTVLYKYRRVREDAQGNVISQYIYTTPGRVIYNKAIQEALAS |
| DNA-directed RNA polymerase subunit omega | F | 78 | Anabaena , Synthetic Construct | MLKRSKFETTQSQIMHRAEDLISAASNRYRITVQVANRAKRRRYEEFESAEDAMMKPVLRAIIEMSDELTQPEIIGEI |
| RNA polymerase sigma factor SigA | G | 390 | Anabaena , Synthetic Construct | MNQANNVLDSIYQPDLEIMNQPEIELDDLLIEEDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYIR |
| NtcB | S | 312 | Anabaena , Synthetic Construct | MRLEQLQAFLAIAETGSFQKAASKCGVTQSTISRQIQSLEADLGLELFHRTNHSKLTLGGERLLPRARKICLEWETATQELGDLIAGKQPELCIAAIHSLCGSYLPPVLQKFCRDYPEVQLRVTSLGSDRALKVLKDGLVDLAIVMNNRFLTTGRDMVVEVLYDEPIELLTAANHPLAAYERVPWSELVRYPQVVFKDGYGMQRLVQEKFERLEATLQAALEVNTLDAFRGVVRQGELIALLPSSALVEARLDPTLAVRPLANSALPENSGLTRRVVMVTTQDRLQIPPIKHFWQLVRENIPPIVERQRSAS |
| NtcB | T | 312 | Anabaena , Synthetic Construct | MRLEQLQAFLAIAETGSFQKAASKCGVTQSTISRQIQSLEADLGLELFHRTNHSKLTLGGERLLPRARKICLEWETATQELGDLIAGKQPELCIAAIHSLCGSYLPPVLQKFCRDYPEVQLRVTSLGSDRALKVLKDGLVDLAIVMNNRFLTTGRDMVVEVLYDEPIELLTAANHPLAAYERVPWSELVRYPQVVFKDGYGMQRLVQEKFERLEATLQAALEVNTLDAFRGVVRQGELIALLPSSALVEARLDPTLAVRPLANSALPENSGLTRRVVMVTTQDRLQIPPIKHFWQLVRENIPPIVERQRSAS |
| NtcB | U | 312 | Anabaena , Synthetic Construct | MRLEQLQAFLAIAETGSFQKAASKCGVTQSTISRQIQSLEADLGLELFHRTNHSKLTLGGERLLPRARKICLEWETATQELGDLIAGKQPELCIAAIHSLCGSYLPPVLQKFCRDYPEVQLRVTSLGSDRALKVLKDGLVDLAIVMNNRFLTTGRDMVVEVLYDEPIELLTAANHPLAAYERVPWSELVRYPQVVFKDGYGMQRLVQEKFERLEATLQAALEVNTLDAFRGVVRQGELIALLPSSALVEARLDPTLAVRPLANSALPENSGLTRRVVMVTTQDRLQIPPIKHFWQLVRENIPPIVERQRSAS |
| NtcB | V | 312 | Anabaena , Synthetic Construct | MRLEQLQAFLAIAETGSFQKAASKCGVTQSTISRQIQSLEADLGLELFHRTNHSKLTLGGERLLPRARKICLEWETATQELGDLIAGKQPELCIAAIHSLCGSYLPPVLQKFCRDYPEVQLRVTSLGSDRALKVLKDGLVDLAIVMNNRFLTTGRDMVVEVLYDEPIELLTAANHPLAAYERVPWSELVRYPQVVFKDGYGMQRLVQEKFERLEATLQAALEVNTLDAFRGVVRQGELIALLPSSALVEARLDPTLAVRPLANSALPENSGLTRRVVMVTTQDRLQIPPIKHFWQLVRENIPPIVERQRSAS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-10-09 Deposition Author(s): Chen, Z.P. , Han, S.J. , Jiang, Y.L. , Kong, W.W. , Shen, L.Q. , Wu, X.X. , Yang, F. , You, L.L. , Zhang, Y. , Zhou, C.Z.