Advanced Search:
8H1J
Cryo-em structure of the tnpb-omegarna-target dna ternary complex
PDB DOI: 10.2210/pdb8h1j/pdb
Classification: RNA BINDING PROTEIN Organism(s): Deinococcus Radiodurans R1 = Atcc 13939 = Dsm 20539 , Synthetic Construct
Deposited: 2022-10-03 Deposition Author(s): Hirano, H. , Nakagawa, R. , Nureki, O. , Omura, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Cryo-em structure of the tnpb-omegarna-target dna ternary complex
Hirano, H. , Nakagawa, R. , Nureki, O. , Omura, S.
Primary Citation of Related Structures: 8H1J
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-guided DNA endonuclease TnpB | A | 410 | Deinococcus Radiodurans R1 = Atcc 13939 = Dsm 20539 , Synthetic Construct | GSMIRNKAFVVRLYPNAAQTELINRTLGSARFVYNHFLARRIAAYKESGKGLTYGQTSSELTLLKQAEETSWLSEVDKFALQNSLKNLETAYKNFFRTVKQSGKKVGFPRFRKKRTGESYRTQFTNNNIQIGEGRLKLPKLGWVKTKGQQDIQGKILNVTVRRIHEGHYEASVLCEVEIPYLPAAPKFAAGVDVGIKDFAIVTDGVRFKHEQNPKYYRSTLKRLRKAQQTLSRRKKGSARYGKAKTKLARIHKRIVNKRQDFLHKLTTSLVREYEIIGTEHLKPDNMRKNRRLALSISDAGWGEFIRQLEYKAAWYGRLVSKVSPYFPSSQLCHDCGFKNPEVKNLAVRTWTCPNCGETHDRDENAALNIRREALVAAGISDTLNAHGGYVRPASAGNGLRSENHATLVV |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Target strand | c | 35 | NA | ATTTGAATGGGCGCCAAGGGACTCATCAATAGAAA |
| omegaRNA (130-MER) | b | 247 | NA | GAUUCAAGAAUCCCGAAGUGAAGAAUCUUGCCGUCCGUACAUGGACUUGCCCGAACUGUGGGGAAACCCAUGACCGAGACGAGAACGCUGCGCUGAACAUUCGGCGUGAAGCGUUGGUGGCUGCGGGAAUCUCAGACACCUUAAACGCUCAUGGAGGCUAUGUCAGACCUGCUUCGGCGGGCAAUGGUCUGCGAAGUGAGAAUCACGCGACUUUAGUCGUGUGAGGUUCAAGAGUCCCUUGGCGCCC |
| Non-target strand | d | 35 | NA | TTTCTATTGATGAGTCCCTTGGCGCCCATTCAAAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-10-03 Deposition Author(s): Hirano, H. , Nakagawa, R. , Nureki, O. , Omura, S.