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8H1C

Cryo-em structure of oryza sativa plastid glycyl-trna synthetase in complex with two trnas (one in trna binding state and the other in trna locked state)

PDB DOI: 10.2210/pdb8h1c/pdb

Classification: LIGASE/RNA
Organism(s): Oryza Sativa , Oryza Sativa Japonica Group

Deposited: 2022-10-02
Deposition Author(s): Li, Y. , Lin, J. , Lu, G. , Wu, Z. , Yu, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

8h1c
Literature

Cryo-em structure of oryza sativa plastid glycyl-trna synthetase in complex with two trnas (one in trna binding state and the other in trna locked state)

Li, Y. , Lin, J. , Lu, G. , Wu, Z. , Yu, Z.

Primary Citation of Related Structures: 8H1C


Proteins
Molecule Chains Sequence Length Organism Sequence
Glycine--tRNA ligase B 1045 Oryza Sativa , Oryza Sativa Japonica Group HHHHHHHHGSSLEVLFQGPAVASADGDAPSPVSVSASAATKGPSSSSVLTFQQAIQRLQDYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGDNPNRLQRHTQFQVILKPDPGNSQDLFLHSLSALGINVREHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQSGSLPLLPVSVEITYGLERILMSLQGVDHFKNIQYTKGITYGELFLENEKEMSAYYLEHANVDNIQKHFDDFEEEARSLLSLWLPIPAYDHVLKASHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWVKTRENLGYPLGTYQESNLIYPHVSEKPSRKGVVGQPRAFVLEIGTEELPPHDVIEATKQLEKSLIQILEKRRLSHGKVRSYGTPRRLAVVVENLNMKQMEEEIELRGPPVAKAFDQEGRPTKAAEGFCRKNNVPIDSLYRRTDGKTEYIYARVKESARFADEVLTEDLPTIISGISFPKSMRWNSNIVFSRPIRWIFALHGDLIVPFCFAGISSGNQSCGLRNSSLANFKVEAAELYLHTLEKAGILIDMQERKQRILHDSSILAEGVGGDIIAPDSLVQEVINLVEAPMPIIGRYDVSFLALPKDVLITVMQKHQKYFPVTSKTMGNLLPCFITVANGAIKEEVVRKGNEAVLRARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTVAEVALLLGINEKMIPAIKDAAALAMSDLATNIVTEFTSLAGIMARHYALRDGLSEQIAEALFEITLPRFSGDVFPKTDPGIVLAVTDRLDSLVGLFGAGCQPSSTNDPFGLRRISYGLVQILVENKKNFDLTKALTLVAEEQPITIDSGVIDEVVQFVTRRLEQLLVDEGINCEIVRSVLIERANCPYLASQTAIEMEAFSRTEDFPKIVEAYSRPTRIIRGKEIGSALEVDASVFEKDEERALWSAYLEVADKIHPGVDIKAFADASLELLQPLEDFFTNVFVMAEDEKVRNNRLALLTKVASLPKGIADLSVLPGF
Glycine--tRNA ligase A 1045 Oryza Sativa , Oryza Sativa Japonica Group HHHHHHHHGSSLEVLFQGPAVASADGDAPSPVSVSASAATKGPSSSSVLTFQQAIQRLQDYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGDNPNRLQRHTQFQVILKPDPGNSQDLFLHSLSALGINVREHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQSGSLPLLPVSVEITYGLERILMSLQGVDHFKNIQYTKGITYGELFLENEKEMSAYYLEHANVDNIQKHFDDFEEEARSLLSLWLPIPAYDHVLKASHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWVKTRENLGYPLGTYQESNLIYPHVSEKPSRKGVVGQPRAFVLEIGTEELPPHDVIEATKQLEKSLIQILEKRRLSHGKVRSYGTPRRLAVVVENLNMKQMEEEIELRGPPVAKAFDQEGRPTKAAEGFCRKNNVPIDSLYRRTDGKTEYIYARVKESARFADEVLTEDLPTIISGISFPKSMRWNSNIVFSRPIRWIFALHGDLIVPFCFAGISSGNQSCGLRNSSLANFKVEAAELYLHTLEKAGILIDMQERKQRILHDSSILAEGVGGDIIAPDSLVQEVINLVEAPMPIIGRYDVSFLALPKDVLITVMQKHQKYFPVTSKTMGNLLPCFITVANGAIKEEVVRKGNEAVLRARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTVAEVALLLGINEKMIPAIKDAAALAMSDLATNIVTEFTSLAGIMARHYALRDGLSEQIAEALFEITLPRFSGDVFPKTDPGIVLAVTDRLDSLVGLFGAGCQPSSTNDPFGLRRISYGLVQILVENKKNFDLTKALTLVAEEQPITIDSGVIDEVVQFVTRRLEQLLVDEGINCEIVRSVLIERANCPYLASQTAIEMEAFSRTEDFPKIVEAYSRPTRIIRGKEIGSALEVDASVFEKDEERALWSAYLEVADKIHPGVDIKAFADASLELLQPLEDFFTNVFVMAEDEKVRNNRLALLTKVASLPKGIADLSVLPGF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA(gly) (74-MER) c 74 NA GCGAGCGUAGUUCAAUGGUAAAACAUCUCCUUGCCAAGGAGAAGAUACGGGUUCGAUUCCCGCCGCUCGCCCCA
tRNA(gly) (74-MER) d 74 NA GCGAGCGUAGUUCAAUGGUAAAACAUCUCCUUGCCAAGGAGAAGAUACGGGUUCGAUUCCCGCCGCUCGCCCCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-10-02
Deposition Author(s): Li, Y. , Lin, J. , Lu, G. , Wu, Z. , Yu, Z.