8H0L
Sulfur binding domain of hga complexed with phosphorothioated dna
PDB DOI: 10.2210/pdb8h0l/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Onion Yellows Phytoplasma (Strain Oy-M) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2022-09-29 Deposition Author(s): He, X. , Hu, W. , Liu, G. , Xiao, Q. , Yang, B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.8 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SBDHga1 | A | 163 | Onion Yellows Phytoplasma (Strain Oy-M) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GSHMSLLEYEAKFSELNPNRRHGNTSPHKIAMLLAVMDLIESGSLQENRIYFDRQLKDAFTKRFNELKSEADRDNPHLPYYHLHTSGFWHHQVNPGQRESYKTMSASGASAIDQHIAYAYLDEELFELLQNFTVRKLLTSALDRNFAITETSRKSILGSNNHW |
| SBDHga1 | B | 163 | Onion Yellows Phytoplasma (Strain Oy-M) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GSHMSLLEYEAKFSELNPNRRHGNTSPHKIAMLLAVMDLIESGSLQENRIYFDRQLKDAFTKRFNELKSEADRDNPHLPYYHLHTSGFWHHQVNPGQRESYKTMSASGASAIDQHIAYAYLDEELFELLQNFTVRKLLTSALDRNFAITETSRKSILGSNNHW |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*CP*GP*AP*AP*CP*TP*CP*G)-3') | d | 10 | NA | GCCGAACTCG |
| DNA (5'-D(*GP*CP*CP*GP*AP*AP*CP*TP*CP*G)-3') | f | 10 | NA | GCCGAACTCG |
| DNA (5'-D(*CP*GP*AP*GP*(PST)P*TP*CP*GP*GP*C)-3') | c | 10 | NA | CGAGTTCGGC |
| DNA (5'-D(*CP*GP*AP*GP*(PST)P*TP*CP*GP*GP*C)-3') | e | 10 | NA | CGAGTTCGGC |
Experimental Data
Method: X-RAY DIFFRACTION