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FASTA Sequence PDB Format mmCIF Format
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8H0I

Cryo-em structure of apobec3g-vif complex

PDB DOI: 10.2210/pdb8h0i/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct

Deposited: 2022-09-29
Deposition Author(s): Hyun, J. , Kim, T.G. , Kouno, T. , Shibata, S. , Wolf, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

8h0i
Literature

Cryo-em structure of apobec3g-vif complex

Hyun, J. , Kim, T.G. , Kouno, T. , Shibata, S. , Wolf, M.

Primary Citation of Related Structures: 8H0I


Proteins
Molecule Chains Sequence Length Organism Sequence
APOBEC3G A 371 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GPGHMDPDTFSYNFNNRPILSRRNTVWLCYEVERLDNGTWVKMDQHRGQVYSELKYHPEMRFLSLVSKWKLHRDQEYEVTWYISWSPCTKCARDMATFLQENTHVTLTIFVARLYYFWDPDYQEALRSLAQAGATIKIMNYDEFQHCWSKFVYSQGAPFQPWDGLDEYSQALSGMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLSGRLRAILQNQEN
APOBEC3G B 371 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GPGHMDPDTFSYNFNNRPILSRRNTVWLCYEVERLDNGTWVKMDQHRGQVYSELKYHPEMRFLSLVSKWKLHRDQEYEVTWYISWSPCTKCARDMATFLQENTHVTLTIFVARLYYFWDPDYQEALRSLAQAGATIKIMNYDEFQHCWSKFVYSQGAPFQPWDGLDEYSQALSGMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLSGRLRAILQNQEN
Viral infectivity factor C 152 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MGSSHHHHHHSQDPMENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK
Viral infectivity factor E 152 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MGSSHHHHHHSQDPMENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK
Viral infectivity factor G 152 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MGSSHHHHHHSQDPMENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK
Viral infectivity factor I 152 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MGSSHHHHHHSQDPMENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK
Core binding factor beta D 156 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDR
Core binding factor beta F 156 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDR
Core binding factor beta H 156 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDR
Core binding factor beta J 156 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*CP*GP*GP*UP*UP*GP*AP*UP*CP*GP*UP*UP*UP*UP*AP*AP*CP*AP*A)-3') x 20 NA CGGUUGAUCGUUUUAACAAA
RNA (5'-R(*CP*GP*GP*UP*UP*GP*AP*UP*CP*GP*UP*UP*UP*UP*AP*AP*CP*AP*A)-3') y 20 NA CGGUUGAUCGUUUUAACAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-29
Deposition Author(s): Hyun, J. , Kim, T.G. , Kouno, T. , Shibata, S. , Wolf, M.