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FASTA Sequence PDB Format mmCIF Format
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8GTD

Cryo-em model of the marine siphophage vb_dshs-r4c portal-adaptor complex

PDB DOI: 10.2210/pdb8gtd/pdb

Classification: VIRUS
Organism(s): Dinoroseobacter Phage Vb_Dshs-R4C

Deposited: 2022-09-08
Deposition Author(s): Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

8gtd
Literature

Cryo-em model of the marine siphophage vb_dshs-r4c portal-adaptor complex

Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.

Primary Citation of Related Structures: 8GTD


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein A 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein B 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein C 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein D 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein E 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein F 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein G 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein H 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein I 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein J 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein K 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Portal protein L 551 Dinoroseobacter Phage Vb_Dshs-R4C MRFWPFSKTTNAATRAEPMVTRPDTAPRVRSYRAAKSDRIAGGFGVFPTTPRDELRREIRGLVGHSRHAAQNFDYARAYEMLTRRHVIGFNGIRLQMDVRDPGGKKDVAAGAQIESAWARWGKMKNSPTPCGRLSWWGVECQVATGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVGIAREGGSFVRIHQGTNRGRFGFQVEPIPFDLLDLDLTGPTPGGGFVESGVEFDATDRVVAYHMWSAAMSEGHRPGARRRLRIPAAQMLYVLVPEEIGQALGVPRSATALRLMNLSEKFQESALTAANYGASNMVFFERAADNGVVTGPEDDAQIPIDQIEAGTLTELPPGVKAVSHNPAYPDAAVGPFLRQMGTSQAAGLGVSYETLTADLSGANFSSLRAGKGEEREEWRMLQRAVFEGLHDRVFSRWLPLAMLSGEVRLPLAKLDKFDAATWRPRGWPSVNPKDDATAHEKDLKNGVRTRTEICAERGRDFADVVAEAAAERQMMRDAGLDPDAPLRTSPPETPPDPGEEIEGKDT
Head-to-tail joining protein M 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein N 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein O 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein P 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein Q 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein R 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein S 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein T 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein U 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein V 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein W 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Head-to-tail joining protein X 178 Dinoroseobacter Phage Vb_Dshs-R4C MTVSIHPPATLVAGDSWAWEAGAVFEDHPDPWAASYVLRPEAGGDPVTVSGGLEVLAPVFRLPASVTADLPPGEWTWFAVAVDATTDARAVLAQGRVTVIPDPLAGTEDRRTPARRILAAIEATLEGRATKDADTYSIEGRSITRTPLPDLLRLRAVYAEQVARETGRSPYRQRRVSF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-08
Deposition Author(s): Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.