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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8GTC

Cryo-em model of the marine siphophage vb_dshs-r4c baseplate-tail complex

PDB DOI: 10.2210/pdb8gtc/pdb

Classification: VIRAL PROTEIN
Organism(s): Dinoroseobacter Phage Vb_Dshs-R4C

Deposited: 2022-09-08
Deposition Author(s): Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

8gtc
Literature

Cryo-em model of the marine siphophage vb_dshs-r4c baseplate-tail complex

Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.

Primary Citation of Related Structures: 8GTC


Proteins
Molecule Chains Sequence Length Organism Sequence
Ribonuclease III A 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Major tail protein B 130 Dinoroseobacter Phage Vb_Dshs-R4C MLKGKDGVVKNASTGDSIGHLQSWALDTQRDEVSGWGMGDDAERAFTTVGRASGNFEVYLDPADPSDDLEPGDLVDLELYPGGESTGSGYRSVAGALILSTAESASKDGIPMLTVNWRTSGALPQKATVS
Major tail protein C 130 Dinoroseobacter Phage Vb_Dshs-R4C MLKGKDGVVKNASTGDSIGHLQSWALDTQRDEVSGWGMGDDAERAFTTVGRASGNFEVYLDPADPSDDLEPGDLVDLELYPGGESTGSGYRSVAGALILSTAESASKDGIPMLTVNWRTSGALPQKATVS
Major tail protein D 130 Dinoroseobacter Phage Vb_Dshs-R4C MLKGKDGVVKNASTGDSIGHLQSWALDTQRDEVSGWGMGDDAERAFTTVGRASGNFEVYLDPADPSDDLEPGDLVDLELYPGGESTGSGYRSVAGALILSTAESASKDGIPMLTVNWRTSGALPQKATVS
Major tail protein E 130 Dinoroseobacter Phage Vb_Dshs-R4C MLKGKDGVVKNASTGDSIGHLQSWALDTQRDEVSGWGMGDDAERAFTTVGRASGNFEVYLDPADPSDDLEPGDLVDLELYPGGESTGSGYRSVAGALILSTAESASKDGIPMLTVNWRTSGALPQKATVS
Major tail protein F 130 Dinoroseobacter Phage Vb_Dshs-R4C MLKGKDGVVKNASTGDSIGHLQSWALDTQRDEVSGWGMGDDAERAFTTVGRASGNFEVYLDPADPSDDLEPGDLVDLELYPGGESTGSGYRSVAGALILSTAESASKDGIPMLTVNWRTSGALPQKATVS
Distal tail protein G 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Distal tail protein H 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Distal tail protein I 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Distal tail protein J 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Distal tail protein K 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Distal tail protein L 214 Dinoroseobacter Phage Vb_Dshs-R4C MQFIDVEFPRDIAAGCQAVLTRRDEVVTLASGREEVNSRWADTRRSWDAGLGVRDEADLAQVVALFEEVRGRLYAFRFRDWLDWRTAATRAPITATDQPLGLGDGSRTAFQVVKVYGAVNPYTRPLSLPHPGTVRVALDGVTQPSGWTLTAPGGVITFDTPPALGVTVTAGCSFDVPVRFSDPELAVQWAYFREGQAGLAQAPSIPLIEVRLDP
Megatron protein M 1447 Dinoroseobacter Phage Vb_Dshs-R4C MATVLLAAAGGAIGTSLGGALFGISAAVIGQAVGGLIGQTIDARLSGGGTIKQTGPRLDSLEVMVSQEGTPLADISGRVAVAGTVIWATKLEEIARTTSTRVGSGKSSQKVKSTNFDYAASFAVSLGEGPLNGIGRIFLDGQVRDLSEMISENRVRFYPGTEDQEPDPLIEAIEGAAPAFRGTAYLVFERLFLSDFGNRVPQVRVEVFGQSGEMEKGVTGVCVIPGSTEFGYMPAPVRQQSLDGADVVWEGPENCNRYSRISDWSLSMDHLKNTLPAVQTVSLVVAWFGTDLRAGLCRFEPRIELRAKRTSIEWIAAGLNRGSATEVSRDENDRPAFGSSPADVSVVRAIMDLKARGFRVVLYPFVMMDVTADQALPSPAGTGAQGAYPWRGRIMPDVTGGRVSDQIAALMGTAQPDDFTAAVTRNKSGEISQVNLTCPGAPGDAGLRRFILHLAKLADIAGGVDAFLVGTEFRGLSQAWEPQTYADAYEFLNSSEGWFAQNAARTHEPGSLLVSATARDPRLISPPLSIDGAAARWIEIEFDRTSAPVWEGNVYYMTEDHGFAGAFRKVISDAEAPADGTRARMLLDMHDLTLGGDDWRTSTITRLRFDFSSESDAVFRIHAIRLGGGRRYPFVDALRDLAQDVDTILPTAKISYAADWSEYHSHQDAGDLTFHLDPLWADPAIDFVGIDNYLPLSDWRQGADHLDYDATSGRTTPYDLDYLKSNIEGGEYWDWFYASQEDRDTQTRTPISDGSYGEPWVFRQKAIRDWHANAHHNRTAGVRATTSTGWVPGSKPVWFTEYGCPAVDLGANRPNVFAAASSSESALPWYSSGLRDDFMQRQYLRAMAEWWTANGAPAVDLANCQAWAWDARPFPEFPLRPATWSDGPDWRLGHWLNGRAGAAPAAEAITRRAITRHGLISADIDTSRAYGQADGYAAPAPLGLGDYAQPFEVALGLQTTETGGALVIEAKPAAPLAADVIEADLVDTPAIYTLTRGALEDTPAAAIVRFRDGLSDYEITAARARIGAGKEGGSATADLALVLDGDRGNAAAEMVLRAALTSRESLSVTLPRSATTLRPGSLVEVTLGTEARRLFLVDRVVDGQAREVTLRGFDRAAYAPSGGVFKAARAGRLQGSTSSLTRFLDLPLLPGVDAPEWEGFIAAHAEPWPGAMLHSRGSTPEGSFTLAAEADARATIGRTTAALPPAPAHVWTPGPLVVTLFSGALVGRPDLDVLDGANALAIQHPDGWEVVQFREATLTADRTWRLEGLLRGQRGTDGIVGPAPLPAGAAVVAIDTALVAAGLSADDPGRALWWRSGPDAASLAAAPLRPHTFTAAGLRAFPPAHLRAVVTGGGDTSLSWVPRSRLVGTTWPDNGAPIPSGEGLERYQVTIGPTAAPVRVILADTPAATYTAAERAADGIAAPFRVAVSQISETTGPGPWIETIVTE
Megatron protein N 1447 Dinoroseobacter Phage Vb_Dshs-R4C MATVLLAAAGGAIGTSLGGALFGISAAVIGQAVGGLIGQTIDARLSGGGTIKQTGPRLDSLEVMVSQEGTPLADISGRVAVAGTVIWATKLEEIARTTSTRVGSGKSSQKVKSTNFDYAASFAVSLGEGPLNGIGRIFLDGQVRDLSEMISENRVRFYPGTEDQEPDPLIEAIEGAAPAFRGTAYLVFERLFLSDFGNRVPQVRVEVFGQSGEMEKGVTGVCVIPGSTEFGYMPAPVRQQSLDGADVVWEGPENCNRYSRISDWSLSMDHLKNTLPAVQTVSLVVAWFGTDLRAGLCRFEPRIELRAKRTSIEWIAAGLNRGSATEVSRDENDRPAFGSSPADVSVVRAIMDLKARGFRVVLYPFVMMDVTADQALPSPAGTGAQGAYPWRGRIMPDVTGGRVSDQIAALMGTAQPDDFTAAVTRNKSGEISQVNLTCPGAPGDAGLRRFILHLAKLADIAGGVDAFLVGTEFRGLSQAWEPQTYADAYEFLNSSEGWFAQNAARTHEPGSLLVSATARDPRLISPPLSIDGAAARWIEIEFDRTSAPVWEGNVYYMTEDHGFAGAFRKVISDAEAPADGTRARMLLDMHDLTLGGDDWRTSTITRLRFDFSSESDAVFRIHAIRLGGGRRYPFVDALRDLAQDVDTILPTAKISYAADWSEYHSHQDAGDLTFHLDPLWADPAIDFVGIDNYLPLSDWRQGADHLDYDATSGRTTPYDLDYLKSNIEGGEYWDWFYASQEDRDTQTRTPISDGSYGEPWVFRQKAIRDWHANAHHNRTAGVRATTSTGWVPGSKPVWFTEYGCPAVDLGANRPNVFAAASSSESALPWYSSGLRDDFMQRQYLRAMAEWWTANGAPAVDLANCQAWAWDARPFPEFPLRPATWSDGPDWRLGHWLNGRAGAAPAAEAITRRAITRHGLISADIDTSRAYGQADGYAAPAPLGLGDYAQPFEVALGLQTTETGGALVIEAKPAAPLAADVIEADLVDTPAIYTLTRGALEDTPAAAIVRFRDGLSDYEITAARARIGAGKEGGSATADLALVLDGDRGNAAAEMVLRAALTSRESLSVTLPRSATTLRPGSLVEVTLGTEARRLFLVDRVVDGQAREVTLRGFDRAAYAPSGGVFKAARAGRLQGSTSSLTRFLDLPLLPGVDAPEWEGFIAAHAEPWPGAMLHSRGSTPEGSFTLAAEADARATIGRTTAALPPAPAHVWTPGPLVVTLFSGALVGRPDLDVLDGANALAIQHPDGWEVVQFREATLTADRTWRLEGLLRGQRGTDGIVGPAPLPAGAAVVAIDTALVAAGLSADDPGRALWWRSGPDAASLAAAPLRPHTFTAAGLRAFPPAHLRAVVTGGGDTSLSWVPRSRLVGTTWPDNGAPIPSGEGLERYQVTIGPTAAPVRVILADTPAATYTAAERAADGIAAPFRVAVSQISETTGPGPWIETIVTE
Megatron protein O 1447 Dinoroseobacter Phage Vb_Dshs-R4C MATVLLAAAGGAIGTSLGGALFGISAAVIGQAVGGLIGQTIDARLSGGGTIKQTGPRLDSLEVMVSQEGTPLADISGRVAVAGTVIWATKLEEIARTTSTRVGSGKSSQKVKSTNFDYAASFAVSLGEGPLNGIGRIFLDGQVRDLSEMISENRVRFYPGTEDQEPDPLIEAIEGAAPAFRGTAYLVFERLFLSDFGNRVPQVRVEVFGQSGEMEKGVTGVCVIPGSTEFGYMPAPVRQQSLDGADVVWEGPENCNRYSRISDWSLSMDHLKNTLPAVQTVSLVVAWFGTDLRAGLCRFEPRIELRAKRTSIEWIAAGLNRGSATEVSRDENDRPAFGSSPADVSVVRAIMDLKARGFRVVLYPFVMMDVTADQALPSPAGTGAQGAYPWRGRIMPDVTGGRVSDQIAALMGTAQPDDFTAAVTRNKSGEISQVNLTCPGAPGDAGLRRFILHLAKLADIAGGVDAFLVGTEFRGLSQAWEPQTYADAYEFLNSSEGWFAQNAARTHEPGSLLVSATARDPRLISPPLSIDGAAARWIEIEFDRTSAPVWEGNVYYMTEDHGFAGAFRKVISDAEAPADGTRARMLLDMHDLTLGGDDWRTSTITRLRFDFSSESDAVFRIHAIRLGGGRRYPFVDALRDLAQDVDTILPTAKISYAADWSEYHSHQDAGDLTFHLDPLWADPAIDFVGIDNYLPLSDWRQGADHLDYDATSGRTTPYDLDYLKSNIEGGEYWDWFYASQEDRDTQTRTPISDGSYGEPWVFRQKAIRDWHANAHHNRTAGVRATTSTGWVPGSKPVWFTEYGCPAVDLGANRPNVFAAASSSESALPWYSSGLRDDFMQRQYLRAMAEWWTANGAPAVDLANCQAWAWDARPFPEFPLRPATWSDGPDWRLGHWLNGRAGAAPAAEAITRRAITRHGLISADIDTSRAYGQADGYAAPAPLGLGDYAQPFEVALGLQTTETGGALVIEAKPAAPLAADVIEADLVDTPAIYTLTRGALEDTPAAAIVRFRDGLSDYEITAARARIGAGKEGGSATADLALVLDGDRGNAAAEMVLRAALTSRESLSVTLPRSATTLRPGSLVEVTLGTEARRLFLVDRVVDGQAREVTLRGFDRAAYAPSGGVFKAARAGRLQGSTSSLTRFLDLPLLPGVDAPEWEGFIAAHAEPWPGAMLHSRGSTPEGSFTLAAEADARATIGRTTAALPPAPAHVWTPGPLVVTLFSGALVGRPDLDVLDGANALAIQHPDGWEVVQFREATLTADRTWRLEGLLRGQRGTDGIVGPAPLPAGAAVVAIDTALVAAGLSADDPGRALWWRSGPDAASLAAAPLRPHTFTAAGLRAFPPAHLRAVVTGGGDTSLSWVPRSRLVGTTWPDNGAPIPSGEGLERYQVTIGPTAAPVRVILADTPAATYTAAERAADGIAAPFRVAVSQISETTGPGPWIETIVTE
Hub protein P 291 Dinoroseobacter Phage Vb_Dshs-R4C MTDYTDHLATGCTTLARCYILTRRDGVVMGFTDHDRDIDLDGTRCAAGAALDASTAARSLGITPDDMDAGGALSADAITEADLRAGRYDGAQVEVWEVNWTDPAVRGRLGVYTIGQVERGPLAFRAELRTRPALWNRPEGRIHTALCDVDRLGDHRCKLALGPWQSAATVIEADGADLIVSGLDETASNIFDRGVLDWTGGANAGTGSDIRVARPVAGGVRVSLWSAPPFPITAGDTANATVGCDRTADTCRNRFDNLANFRGFPLMPGESFISEYARPGDPDQSGGSRYD
Hub protein Q 291 Dinoroseobacter Phage Vb_Dshs-R4C MTDYTDHLATGCTTLARCYILTRRDGVVMGFTDHDRDIDLDGTRCAAGAALDASTAARSLGITPDDMDAGGALSADAITEADLRAGRYDGAQVEVWEVNWTDPAVRGRLGVYTIGQVERGPLAFRAELRTRPALWNRPEGRIHTALCDVDRLGDHRCKLALGPWQSAATVIEADGADLIVSGLDETASNIFDRGVLDWTGGANAGTGSDIRVARPVAGGVRVSLWSAPPFPITAGDTANATVGCDRTADTCRNRFDNLANFRGFPLMPGESFISEYARPGDPDQSGGSRYD
Hub protein R 291 Dinoroseobacter Phage Vb_Dshs-R4C MTDYTDHLATGCTTLARCYILTRRDGVVMGFTDHDRDIDLDGTRCAAGAALDASTAARSLGITPDDMDAGGALSADAITEADLRAGRYDGAQVEVWEVNWTDPAVRGRLGVYTIGQVERGPLAFRAELRTRPALWNRPEGRIHTALCDVDRLGDHRCKLALGPWQSAATVIEADGADLIVSGLDETASNIFDRGVLDWTGGANAGTGSDIRVARPVAGGVRVSLWSAPPFPITAGDTANATVGCDRTADTCRNRFDNLANFRGFPLMPGESFISEYARPGDPDQSGGSRYD
Ribonuclease III S 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III T 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III U 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III V 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III W 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III X 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III Y 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Ribonuclease III Z 230 Dinoroseobacter Phage Vb_Dshs-R4C MPTPFLALPLIAEGQAGQHVTHNEALDMIDALAPRVVLSDSLATPPPAPPDRSAWIVPPGGSGFGGAGPGQIALRLGGVWHAITPAQGARWRVLDRGAAVIWSGTSWRPADVSGALGSTLGLATIEATVTATGPSVTAPALIPPRAIVLGVTSWTVQAVTGATSYRVGVPGEPDKFGASLGAAPGSSNIGVVGPFATYAPTDVVVTAEGADFTGGTIGLAASVILPGAPV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-08
Deposition Author(s): Huang, Y. , Li, S. , Sun, H. , Wei, S. , Xia, N. , Zhang, R. , Zheng, Q.