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FASTA Sequence PDB Format mmCIF Format
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8GRM

Cryo-em structure of prc1 bound to h2ak119-ubch5b-ub nucleosome

PDB DOI: 10.2210/pdb8grm/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Homo Sapiens

Deposited: 2022-09-02
Deposition Author(s): Ai, H.S. , Jia-Bin, L. , Jiakun, T. , Liu, L. , Liying, Z. , Man, P. , Zebin, T. , Zhihend, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.05 Å

8grm
Literature

Cryo-em structure of prc1 bound to h2ak119-ubch5b-ub nucleosome

Ai, H.S. , Jia-Bin, L. , Jiakun, T. , Liu, L. , Liying, Z. , Man, P. , Zebin, T. , Zhihend, D.

Primary Citation of Related Structures: 8GRM


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 98 Homo Sapiens KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Histone H3 E 98 Homo Sapiens KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Ubiquitin O 76 Homo Sapiens MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
UbcH5b P 146 Homo Sapiens ALKRIHKELNDLARDPPAQSSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSISSLLSDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
Histone H4 B 85 Homo Sapiens HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 85 Homo Sapiens HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 109 Homo Sapiens RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
Histone H2A type 1-B/E G 109 Homo Sapiens RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
Histone H2B type 1-K D 96 Homo Sapiens KRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-K H 95 Homo Sapiens RSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
COMMD3 protein M 101 Homo Sapiens HRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHP
Ring1B N 101 Homo Sapiens TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCLITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (144-MER) i 144 NA CGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGA
DNA (145-MER) j 145 NA TCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-02
Deposition Author(s): Ai, H.S. , Jia-Bin, L. , Jiakun, T. , Liu, L. , Liying, Z. , Man, P. , Zebin, T. , Zhihend, D.