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8GRA

Structure of type vi secretion system cargo delivery vehicle hcp-vgrg-paar

PDB DOI: 10.2210/pdb8gra/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Bacteroides Fragilis

Deposited: 2022-09-01
Deposition Author(s): He, W. , Wen, Y. , Zhu, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Literature

Structure of type vi secretion system cargo delivery vehicle hcp-vgrg-paar

He, W. , Wen, Y. , Zhu, L.

Primary Citation of Related Structures: 8GRA


Proteins
Molecule Chains Sequence Length Organism Sequence
Type VI secretion system spike protein Paar J 222 Bacteroides Fragilis MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTAHGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAESHINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK
Type VI secretion system spike protein Paar J1 222 Bacteroides Fragilis MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTAHGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAESHINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK
Type VI secretion system spike protein Paar J2 222 Bacteroides Fragilis MKQIVTINLNHICPMVTGVTPHIGGPIIGPGCPGVMVNGVPISVMGDMCVCCGPPDTIVQGEPGILVNGKPIVLQGCMTAHGGIIPAGVPGVTVSSASPIEPITMNHVSPKRNRFLAAISGNNLQEAIENQNALQKKMLEEEPMIFNVHWEKEDIHIAESHINKKVTVNADTIGFKDGETVKFVITPEAIDTANGEQVEDIELTGTVNNNHVTVEWIVELKK
Bacterodales T6SS protein TssD (Hcp) B 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Bacterodales T6SS protein TssD (Hcp) A 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Bacterodales T6SS protein TssD (Hcp) F 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Bacterodales T6SS protein TssD (Hcp) E 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Bacterodales T6SS protein TssD (Hcp) D 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Bacterodales T6SS protein TssD (Hcp) C 129 Bacteroides Fragilis MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK
Type VI secretion system spike protein VgrG I 616 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVNYKGQYSNTFCGVPGGTPIMPWGDAVMPVAYPEMARVVSNDDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAATDNTVKSMRTRSGHTLEFKDDEGGDWGITLRDINGNVIHLNSKDKNIDITAPETITLTAKNVCINTEENVQITAKKNIDMTVEADINSSAKGNLLLQADKDVLTAAKGNVGIEAKSDINMVGKNIAVEGNSKITLNGGQTQVAGQQTTIQGAANKIEIM
Type VI secretion system spike protein VgrG H 616 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVNYKGQYSNTFCGVPGGTPIMPWGDAVMPVAYPEMARVVSNDDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAATDNTVKSMRTRSGHTLEFKDDEGGDWGITLRDINGNVIHLNSKDKNIDITAPETITLTAKNVCINTEENVQITAKKNIDMTVEADINSSAKGNLLLQADKDVLTAAKGNVGIEAKSDINMVGKNIAVEGNSKITLNGGQTQVAGQQTTIQGAANKIEIM
Type VI secretion system spike protein VgrG G 616 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIDTESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVNYKGQYSNTFCGVPGGTPIMPWGDAVMPVAYPEMARVVSNDDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAATDNTVKSMRTRSGHTLEFKDDEGGDWGITLRDINGNVIHLNSKDKNIDITAPETITLTAKNVCINTEENVQITAKKNIDMTVEADINSSAKGNLLLQADKDVLTAAKGNVGIEAKSDINMVGKNIAVEGNSKITLNGGQTQVAGQQTTIQGAANKIEIM
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-01
Deposition Author(s): He, W. , Wen, Y. , Zhu, L.