PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8GB5

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody 25f9

PDB DOI: 10.2210/pdb8gb5/pdb

Classification: IMMUNE SYSTEM
Organism(s): Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2023-02-24
Deposition Author(s): Wilson, I.A. , Yuan, M. , Zhu, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.35 Å

8gb5
Literature

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody 25f9

Wilson, I.A. , Yuan, M. , Zhu, X.

Primary Citation of Related Structures: 8GB5


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 D 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 G 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
Spike protein S1 J 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSGHHHHHH
25F9 Heavy chain B 231 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSLRLSCSASGFRFSDYWINWVRQAPGKGLEWVGFIKTKADFGTPAYAESVKGRFSISRDDSKNTVYLQMNSLKTEDTAVYYCTRDRGILEWLIIEAGWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
25F9 Heavy chain F 231 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSLRLSCSASGFRFSDYWINWVRQAPGKGLEWVGFIKTKADFGTPAYAESVKGRFSISRDDSKNTVYLQMNSLKTEDTAVYYCTRDRGILEWLIIEAGWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
25F9 Heavy chain I 231 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSLRLSCSASGFRFSDYWINWVRQAPGKGLEWVGFIKTKADFGTPAYAESVKGRFSISRDDSKNTVYLQMNSLKTEDTAVYYCTRDRGILEWLIIEAGWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
25F9 Heavy chain L 231 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSLRLSCSASGFRFSDYWINWVRQAPGKGLEWVGFIKTKADFGTPAYAESVKGRFSISRDDSKNTVYLQMNSLKTEDTAVYYCTRDRGILEWLIIEAGWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
25F9 Light chain C 216 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSASGAPGQRVTISCTGSSSNIGAGHYVSWYQQLPGTAPKLLIHENDKRPSGVSDRFSGSRSGASASLTITGLQSGDEADYYCSVWDRSLNTLFGGGTRVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
25F9 Light chain E 216 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSASGAPGQRVTISCTGSSSNIGAGHYVSWYQQLPGTAPKLLIHENDKRPSGVSDRFSGSRSGASASLTITGLQSGDEADYYCSVWDRSLNTLFGGGTRVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
25F9 Light chain H 216 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSASGAPGQRVTISCTGSSSNIGAGHYVSWYQQLPGTAPKLLIHENDKRPSGVSDRFSGSRSGASASLTITGLQSGDEADYYCSVWDRSLNTLFGGGTRVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
25F9 Light chain K 216 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSASGAPGQRVTISCTGSSSNIGAGHYVSWYQQLPGTAPKLLIHENDKRPSGVSDRFSGSRSGASASLTITGLQSGDEADYYCSVWDRSLNTLFGGGTRVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-02-24
Deposition Author(s): Wilson, I.A. , Yuan, M. , Zhu, X.