8G8E
Human oct4 bound to nucleosome with human lin28b sequence
PDB DOI: 10.2210/pdb8g8e/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-02-17 Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.9 Å
Human oct4 bound to nucleosome with human lin28b sequence
Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.
Primary Citation of Related Structures: 8G8E
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| LIN28B DNA (32-MER) | j | 182 | NA | GCATAAGTTAAGTGGTATTAACATATCCTCAGTGGTGAGTATTAACATGGAACTTACTCCAACAATACAGATGCTGAATAAATGTAGTCTAAGTGAAGAAAGAAGGAAAGGTGGGAGCTGCCATCACTCAGAATTGTCCAGCAGGGATTGTGCAAGCTTGTGAATAAAGACACATACTTCAT |
| LIN28B DNA (32-MER) | i | 182 | NA | ATGAAGTATGTGTCTTTATTCACAAGCTTGCACAATCCCTGCTGGACAATTCTGAGTGATGGCAGCTCCCACCTTTCCTTCTTTCTTCACTTAGACTACATTTATTCAGCATCTGTATTGTTGGAGTAAGTTCCATGTTAATACTCACCACTGAGGATATGTTAATACCACTTAACTTATGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| POU domain, class 5, transcription factor 1 | X | 395 | Homo Sapiens , Synthetic Construct | GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRDPNSMAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-02-17 Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.