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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8G88

Human oct4 bound to nucleosome with human nmatn1 sequence

PDB DOI: 10.2210/pdb8g88/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Homo Sapiens , Xenopus Laevis , Synthetic Construct

Deposited: 2023-02-17
Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.3 Å

8g88
Literature

Human oct4 bound to nucleosome with human nmatn1 sequence

Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.

Primary Citation of Related Structures: 8G88


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 135 Homo Sapiens , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 135 Homo Sapiens , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 129 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A G 129 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B D 122 Homo Sapiens , Xenopus Laevis , Synthetic Construct AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B H 122 Homo Sapiens , Xenopus Laevis , Synthetic Construct AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
POU domain, class 5, transcription factor 1 X 395 Homo Sapiens , Xenopus Laevis , Synthetic Construct GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRDPNSMAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
nMATn1 DNA top strand (168-MER) i 186 NA ACATGCACACATGCTAATATATGCACACAATGCACACAGGTTAATATATACACATACACACACATGCACACACACGTGCACACATATATGCACATGCATGCACACACGTATATGCACACACATGCACATGCATGCGCACATAGTCACACACATGCACACATTAGCATATGCATACACATACATGCA
nMatn1 DNA bottom strand (168-MER) j 186 NA TGCATGTATGTGTATGCATATGCTAATGTGTGCATGTGTGTGACTATGTGCGCATGCATGTGCATGTGTGTGCATATACGTGTGTGCATGCATGTGCATATATGTGTGCACGTGTGTGTGCATGTGTGTGTATGTGTATATATTAACCTGTGTGCATTGTGTGCATATATTAGCATGTGTGCATGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-02-17
Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.