8G87
Human oct4 bound to nucleosome with human nmatn1 sequence (focused refinement of oct4 bound region)
PDB DOI: 10.2210/pdb8g87/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-02-17 Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 8.1 Å
Human oct4 bound to nucleosome with human nmatn1 sequence (focused refinement of oct4 bound region)
Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.
Primary Citation of Related Structures: 8G87
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| nMatn1 DNA (top strand) | i | 186 | NA | ACATGCACACATGCTAATATATGCACACAATGCACACAGGTTAATATATACACATACACACACATGCACACACACGTGCACACATATATGCACATGCATGCACACACGTATATGCACACACATGCACATGCATGCGCACATAGTCACACACATGCACACATTAGCATATGCATACACATACATGCA |
| nMatn1 DNA (bottom strand) | j | 186 | NA | TGCATGTATGTGTATGCATATGCTAATGTGTGCATGTGTGTGACTATGTGCGCATGCATGTGCATGTGTGTGCATATACGTGTGTGCATGCATGTGCATATATGTGTGCACGTGTGTGTGCATGTGTGTGTATGTGTATATATTAACCTGTGTGCATTGTGTGCATATATTAGCATGTGTGCATGT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| POU domain, class 5, transcription factor 1 | X | 395 | Homo Sapiens , Synthetic Construct | GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRDPNSMAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-02-17 Deposition Author(s): Bilokapic, S. , Du, Y. , Halic, M. , Malik, D. , Sinha, K.K.