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FASTA Sequence PDB Format mmCIF Format
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8G70

Sars-cov-2 spike/nanobody mixture complex

PDB DOI: 10.2210/pdb8g70/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos

Deposited: 2023-02-16
Deposition Author(s): Bu, F. , Li, F. , Liu, B. , Ye, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Literature

Sars-cov-2 spike/nanobody mixture complex

Bu, F. , Li, F. , Liu, B. , Ye, G.

Primary Citation of Related Structures: 8G70


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 1234 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPAGARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH
Spike glycoprotein B 1234 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPAGARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH
Spike glycoprotein D 1234 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPAGARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGHHHHHH
Nanosota-5 E 137 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQAGGSLRLSCAASESIFRMELMEWYHQAPGKQRELVATINRCGSTNYSDSVKGRFIISSDNAKNSVYLQMNSLKDEDTAVYSCHARTWTSYWGRGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-5 H 137 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQAGGSLRLSCAASESIFRMELMEWYHQAPGKQRELVATINRCGSTNYSDSVKGRFIISSDNAKNSVYLQMNSLKDEDTAVYSCHARTWTSYWGRGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-5 I 137 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQAGGSLRLSCAASESIFRMELMEWYHQAPGKQRELVATINRCGSTNYSDSVKGRFIISSDNAKNSVYLQMNSLKDEDTAVYSCHARTWTSYWGRGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-6 G 141 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQPGGSLRLSCVASGSVTFNSMGWYRQAPGKQRELVAQITAGGDTHYADSVKGRFTISEHRGKNAVYLEMHSLKPEDTAVYYCHLQVPFLGGGYDYWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-6 F 141 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQPGGSLRLSCVASGSVTFNSMGWYRQAPGKQRELVAQITAGGDTHYADSVKGRFTISEHRGKNAVYLEMHSLKPEDTAVYYCHLQVPFLGGGYDYWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-6 K 141 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQPGGSLRLSCVASGSVTFNSMGWYRQAPGKQRELVAQITAGGDTHYADSVKGRFTISEHRGKNAVYLEMHSLKPEDTAVYYCHLQVPFLGGGYDYWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-4 N 150 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSGGRTNYADSVKGRFTISRDNTKNTVYLQMNSLKPEDTAVYYCAAWEASRWYCPLQFSADFSSWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-3 O 138 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQAGGSLRLSCAASGSIFSPNTMGWFRQALGKQREMVAVISSIASTQYANFVKGRFTITRDNTKNTVHLQMNSLIPEDTAVYYCYAVDKSQDYWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Nanosota-3 M 138 Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MAQVQLQESGGGLVQAGGSLRLSCAASGSIFSPNTMGWFRQALGKQREMVAVISSIASTQYANFVKGRFTITRDNTKNTVHLQMNSLIPEDTAVYYCYAVDKSQDYWGQGTQVTVSSGGQHHHHHHGAYPYDVPDYAS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-02-16
Deposition Author(s): Bu, F. , Li, F. , Liu, B. , Ye, G.