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FASTA Sequence PDB Format mmCIF Format
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8G57

Structure of nucleosome-bound sirtuin 6 deacetylase

PDB DOI: 10.2210/pdb8g57/pdb

Classification: TRANSFERASE/DNA
Organism(s): Homo Sapiens , Xenopus Laevis , Synthetic Construct

Deposited: 2023-02-11
Deposition Author(s): Armache, J.-P. , Bryll, A.R. , Chio, U.S. , Feldman, J.L. , Peterson, C.L. , Rechiche, O. , Tan, S. , Zhu, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.07 Å

8g57
Literature

Structure of nucleosome-bound sirtuin 6 deacetylase

Armache, J.-P. , Bryll, A.R. , Chio, U.S. , Feldman, J.L. , Peterson, C.L. , Rechiche, O. , Tan, S. , Zhu, J.

Primary Citation of Related Structures: 8G57


Proteins
Molecule Chains Sequence Length Organism Sequence
NAD-dependent protein deacylase sirtuin-6 K 360 Homo Sapiens , Xenopus Laevis , Synthetic Construct GSMSVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSNVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRERPTSPAPHRPPKRVKAKAVPSKLN
Histone H3 A 132 Homo Sapiens , Xenopus Laevis , Synthetic Construct TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Histone H3 E 132 Homo Sapiens , Xenopus Laevis , Synthetic Construct TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Histone H4 B 85 Homo Sapiens , Xenopus Laevis , Synthetic Construct HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 85 Homo Sapiens , Xenopus Laevis , Synthetic Construct HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 129 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 129 Homo Sapiens , Xenopus Laevis , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 125 Homo Sapiens , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 125 Homo Sapiens , Xenopus Laevis , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA strand 1 i 150 NA TGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
DNA strand 2 j 150 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-02-11
Deposition Author(s): Armache, J.-P. , Bryll, A.R. , Chio, U.S. , Feldman, J.L. , Peterson, C.L. , Rechiche, O. , Tan, S. , Zhu, J.