PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8FYD

Cryo-em structure of cas1:cas2-deddh:half-site integration complex bent crispr repeat conformation

PDB DOI: 10.2210/pdb8fyd/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Megasphaera , Synthetic Construct

Deposited: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

8fyd
Literature

Cryo-em structure of cas1:cas2-deddh:half-site integration complex bent crispr repeat conformation

Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Primary Citation of Related Structures: 8FYD


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (49-MER) j 78 NA TGCGCGTGGGATCACCCCCGCTCGTGCGGGAAAGACAGTAATGGATTCCTTTATTTTCGCCCTTTTACGCTTACTGAC
DNA (64-MER) g 64 NA AGATTGAGACCAGGTCTCCGTTTCATGAGTCTTTCCCGCACGAGCGGGGGTGATCCCACGCGCA
DNA (30-MER) h 33 NA AAACGGAGACCTGGTCTCAATCTGCGTGTTCCC
DNA (13-MER) i 44 NA ACGTCAGTAAGCGTAAAAGGGCGAAAATAAAGGAATCCATTACT

Proteins
Molecule Chains Sequence Length Organism Sequence
Cas2-DEDDh A 289 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKEQSAVSDLPKGFSTAAKLHRAHIAGSGKKKEKPIRYVVIDIETDGKDAKRNHILEIGAIRCEDGKETHFTALISGDAVPPSITKLTGITATLLQKEGQEEKKVLTAFREFIGDDDLVGYHVSFDIEFLRQAFKKYGLGYLKNKTHDLLRIVKKEQLFQADYKLETSLQSYGIHKKVPHRALGDAELVKCLAKKLNKF
Cas2-DEDDh D 289 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKEQSAVSDLPKGFSTAAKLHRAHIAGSGKKKEKPIRYVVIDIETDGKDAKRNHILEIGAIRCEDGKETHFTALISGDAVPPSITKLTGITATLLQKEGQEEKKVLTAFREFIGDDDLVGYHVSFDIEFLRQAFKKYGLGYLKNKTHDLLRIVKKEQLFQADYKLETSLQSYGIHKKVPHRALGDAELVKCLAKKLNKF
Cas1 B 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 C 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 E 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 F 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.