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FASTA Sequence PDB Format mmCIF Format
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8FYA

Cryo-em structure of cas1:cas2-deddh:pam-containing prespacer complex

PDB DOI: 10.2210/pdb8fya/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Megasphaera , Synthetic Construct

Deposited: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.91 Å

8fya
Literature

Cryo-em structure of cas1:cas2-deddh:pam-containing prespacer complex

Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Primary Citation of Related Structures: 8FYA


Proteins
Molecule Chains Sequence Length Organism Sequence
Cas2-DEDDh A 289 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKEQSAVSDLPKGFSTAAKLHRAHIAGSGKKKEKPIRYVVIDIETDGKDAKRNHILEIGAIRCEDGKETHFTALISGDAVPPSITKLTGITATLLQKEGQEEKKVLTAFREFIGDDDLVGYHVSFDIEFLRQAFKKYGLGYLKNKTHDLLRIVKKEQLFQADYKLETSLQSYGIHKKVPHRALGDAELVKCLAKKLNKF
Cas2-DEDDh D 289 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKEQSAVSDLPKGFSTAAKLHRAHIAGSGKKKEKPIRYVVIDIETDGKDAKRNHILEIGAIRCEDGKETHFTALISGDAVPPSITKLTGITATLLQKEGQEEKKVLTAFREFIGDDDLVGYHVSFDIEFLRQAFKKYGLGYLKNKTHDLLRIVKKEQLFQADYKLETSLQSYGIHKKVPHRALGDAELVKCLAKKLNKF
Cas1 B 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 C 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 E 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP
Cas1 F 316 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSEVTSCP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (28-MER) g 28 NA GCAACCACTTGTGCATCATGAGTGATGA
DNA (31-MER) h 33 NA ACTCATGATGCACAAGTGGTTGCGCGTGTTCCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.