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FASTA Sequence PDB Format mmCIF Format
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8FVI

Human apobec3h bound to hiv-1 vif in complex with cbf-beta, elob, eloc, and cul5

PDB DOI: 10.2210/pdb8fvi/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11

Deposited: 2023-01-19
Deposition Author(s): Alvarez-Cabrera, A.L. , Chen, X.S. , Ito, F. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.24 Å

8fvi
Literature

Human apobec3h bound to hiv-1 vif in complex with cbf-beta, elob, eloc, and cul5

Alvarez-Cabrera, A.L. , Chen, X.S. , Ito, F. , Zhou, Z.H.

Primary Citation of Related Structures: 8FVI


Proteins
Molecule Chains Sequence Length Organism Sequence
Core-binding factor subunit beta 0 157 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRD
Virion infectivity factor 1 178 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GPMENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTHPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNK
DNA dC->dU-editing enzyme APOBEC-3H A 189 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GPGGSGGMALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIQAHDHLNLRIFASRLYYHWCKPQQDGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLDRIKS
Cullin 5 X 314 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 GPAGSSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIIS
Elongin-B Y 102 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDV
Elongin-C Z 96 Adineta Vaga , Salmonella Enterica , Anoxybacillus Sp. Lm18-11 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA(5'-R(AP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') b 10 NA AUUUUUUUUU
RNA(5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') c 9 NA AAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-01-19
Deposition Author(s): Alvarez-Cabrera, A.L. , Chen, X.S. , Ito, F. , Zhou, Z.H.