8FQC
Structure of baseplate with receptor binding complex of agrobacterium phage milano
PDB DOI: 10.2210/pdb8fqc/pdb
Classification: VIRUS Organism(s): Agrobacterium Phage Milano
Deposited: 2023-01-05 Deposition Author(s): Egelman, E.H. , Esteves, N.C. , Kelly, R.J. , Kreutzberger, M.A.B. , Leiman, P.G. , Scharf, B. , Sebastian, A. , Sonani, R.R. , Wang, F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Structure of baseplate with receptor binding complex of agrobacterium phage milano
Egelman, E.H. , Esteves, N.C. , Kelly, R.J. , Kreutzberger, M.A.B. , Leiman, P.G. , Scharf, B. , Sebastian, A. , Sonani, R.R. , Wang, F.
Primary Citation of Related Structures: 8FQC
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Baseplate hub protein, gp26 | C1 | 457 | Agrobacterium Phage Milano | MIKPMRIFIGGEELVTYTSAQLQRTKKQMTGSLTVEIFLDYVPTKPTIVNAVRGKEILVYIMGELAFTGIIDKRRGKSVKKQNRDASGRFAFSGGPGSLSEDAGGDVSVNFSKGNGYSVTLTARGRTKYLIDSSQTHPTGFFKNTSDKKVIETLVKEHNVVLQWDAEEIDEPKVTLRDGNRIYNEIFERCNQNCHFAYETRDGKLLITDGTNGTVGEDIILGYNILDFSAEQSEDQANSQITVKGHRTQKGVWGNDAIVQPVQTVADSWVGANIPLTIQHYGDATNEGLQRRAKFEADRRAAESKSVSVTVFHVAQQTGTPWDIGTVHYVEIPPEGIFDVLECVSLTYTVDAKSTLETKLELAPPPSQGISGGAASGVSGLLSSANNLLSDLTTKGIARRVQAGVQIIGGQYPSSWTSAALSAIANPINAITSVVNSLLAKEDEKPPKQPPMRLPPE |
| Baseplate Central Spike, gp27 | A | 188 | Agrobacterium Phage Milano | MTTSKTYDERNRDIQDGFERHVFKGIEHTDTGALVSVKGSGTQEEDVPVINSGYGFTPAADTELEVFLHGDGSDASNKFATMTIPRNKQRKWPEGAGGVQHPFNADKFVQFDDDSIWLKDGKFTLGNNQELTITVSNGLVTLSSNNEVDFRCPKLMHNGVNIGDSHVHPQKPDSGGDSEEDTDPPKRD |
| Baseplate Centerpiece, gp25 | E1 | 398 | Agrobacterium Phage Milano | MAGPCYNPDAEYLPASFKGFSFDADSSDSDHGRNGAEAEFVFGERTGYADLGIKIKSYQLRARFQTNDHIAQTNAFIAVLESPGPGLLVHPTRGTVFAACRSARVTDSKVDAAGVTYVELDFVEANSVLSGFGLVGNLVALALAPIITATEGSFKRHFSPDNIRYYNTEAVVSTMAQAVTQVQNAYLAISGNDTSQDKWTTVRDFRNVLIDEFTFYSPANAWNVLRNGFAILDAAATGSDKFNVLRNLINWSSTHSDLDGESGDAENAIFTAVRVLSAAYLAKAYTETAATTVNEGLTQYDLIAAVLEQEAQIAKDDCHDNEFFLQIRAFAVDVARVMVNRAYNSPSLIVYAFPGTVHGLVAAWEIFGDAKRSRDLEARNNGSPWAVGPKIISERVRA |
| Tail-tube, gp21 | A1 | 136 | Agrobacterium Phage Milano | MACNKQNGVKNILITFTDCDTQEVIGPISHEQPDDTLPTYKNCAWTNTALTNGYVQRSASNATMTLPVVRDLRVPLAFYQGCAQVDVQVEKFDGTVMTLTEGAVVEPEESDGRSVTMNIVASEIDELLPPGSLAAA |
| Baseplate Wedge 2 protein, gp29 | F1 | 396 | Agrobacterium Phage Milano | MSCTIQRPDPQDLRNDIATRFSTNVLGGAPIIPESNEFYVVSLEYAMQEEFYAFGEQMWRERDPRFACCENLVKMAAERGVYPKPAQFAQGYVRMTGTPGSALNQGLRFQFGNQTYEPASVVPDQLPATGILVLRVSAVNPGPSGNARVTDGTLVTPVPGISSAVTAYGGNFCGGSDEEECEQFRTRYLQRLQYQPRFTVEWLKSKAAEWPCVTDVFDLGPNCCAVNALGEVVCPNNFEFYVLFRDTFDCGLAPQCVVDEITDWLFGSPQGLGLGEAEFGICGKVRTAAPVKLDIILDGLSCATPAQSRVVEERVTDFVNRLPPSTNLTIDQLRFIGLQVLGPSFNFNVAIRSPNDAVQPGLRFTSCGDAEIDCDYKACLNSVVVINNNVTTSGCL |
| Baseplate Wedge 2 protein, gp29 | G1 | 396 | Agrobacterium Phage Milano | MSCTIQRPDPQDLRNDIATRFSTNVLGGAPIIPESNEFYVVSLEYAMQEEFYAFGEQMWRERDPRFACCENLVKMAAERGVYPKPAQFAQGYVRMTGTPGSALNQGLRFQFGNQTYEPASVVPDQLPATGILVLRVSAVNPGPSGNARVTDGTLVTPVPGISSAVTAYGGNFCGGSDEEECEQFRTRYLQRLQYQPRFTVEWLKSKAAEWPCVTDVFDLGPNCCAVNALGEVVCPNNFEFYVLFRDTFDCGLAPQCVVDEITDWLFGSPQGLGLGEAEFGICGKVRTAAPVKLDIILDGLSCATPAQSRVVEERVTDFVNRLPPSTNLTIDQLRFIGLQVLGPSFNFNVAIRSPNDAVQPGLRFTSCGDAEIDCDYKACLNSVVVINNNVTTSGCL |
| Baseplate wedge 1, gp28 | H1 | 178 | Agrobacterium Phage Milano | MTCTVDVADRRKRFWTTQIAACGTSSDDCGDCARPGLQLMCNGQGQVTVSTDNYAVGLALNILLTDASKADTGCGWTPGNRGGFWGDSFRSDNLRSGSKIRQVPTRTSMRETVSLIRAYALDDLKKLVTYGVAKSVDVDLTYRGSNKIDMTVIIQGVDGNESRVGLTGERISNAWVWS |
| Tail sheath protein, gp20 | I1 | 503 | Agrobacterium Phage Milano | MAQDALSDGFVRLCIDPSLNFFGEGCKILVEGQMTDDGSATPDAVTCVTSELDIIERFGQGSVLTESLRKVFCTCKSGVSVYALPREDAAAGVKAVYTLTIAGPATTDGRVQLYMGEAEYAVDIGVDAGDTATDIAAAIVAAISPDFPYAATAAAGVITLTARNAGTIGNHLSVIYTNLGSCTSVTPEGVTVTFAQTTAGSVNPTPNDYATVVNECCFAVYVLSSDDTDWQENLRDWIRSAWDCSKPQCFGHGYVFNKGTLGQVLADGDNSAELSRLALPTTYPVLPYLTNAAYGALSACSTCNNPELNIQGQTFGLLSCINMPESCTPGWTFGEVTQLQANGFVVSGPSTTSGQGNYTSPYIYNDVTNYLRDEKNRPNATFRDASSRRLAAATGVALAEFLQQFNGLAVFTKNTNIRTGIIGTNPRLMLGKIRKWAQDNVGTLFSEFDNINEDIQLLTDFEVQPKCVGQPGIFHLNMRYRPPVRGARINVNMAPALFDNCDR |
| Baseplate Wedge 3 protein, gp30 | J1 | 286 | Agrobacterium Phage Milano | MNVLIPGIDGMVSAGTLEYTGCCPPSFADVDECTLATAFVGLLPSGPLWDRPKYEAITTITEAGNCAACWTTDHCPTLVDYAVNVGARLASVIERTIWPAVRESDPFTAVTSTADWLNRFDWVNCFETSCRSKELGEKTPIEYMTDCGPVYVKITYPPSLQQAFESALIKSLERLSMGIIKNLAAINFVIEPLKVRVVPVDTTDACENETLCVVLEKTSDFFDGVNANTCGIPTPVAAYIDRDVMQLPSDLDKYIWPGHMAAECIVRSLLSHVSRFCLIRTEQAPD |
| Tail sheath protein, gp20 | K1 | 503 | Agrobacterium Phage Milano | MAQDALSDGFVRLCIDPSLNFFGEGCKILVEGQMTDDGSATPDAVTCVTSELDIIERFGQGSVLTESLRKVFCTCKSGVSVYALPREDAAAGVKAVYTLTIAGPATTDGRVQLYMGEAEYAVDIGVDAGDTATDIAAAIVAAISPDFPYAATAAAGVITLTARNAGTIGNHLSVIYTNLGSCTSVTPEGVTVTFAQTTAGSVNPTPNDYATVVNECCFAVYVLSSDDTDWQENLRDWIRSAWDCSKPQCFGHGYVFNKGTLGQVLADGDNSAELSRLALPTTYPVLPYLTNAAYGALSACSTCNNPELNIQGQTFGLLSCINMPESCTPGWTFGEVTQLQANGFVVSGPSTTSGQGNYTSPYIYNDVTNYLRDEKNRPNATFRDASSRRLAAATGVALAEFLQQFNGLAVFTKNTNIRTGIIGTNPRLMLGKIRKWAQDNVGTLFSEFDNINEDIQLLTDFEVQPKCVGQPGIFHLNMRYRPPVRGARINVNMAPALFDNCDR |
| Tail sheath protein, gp20 | M1 | 503 | Agrobacterium Phage Milano | MAQDALSDGFVRLCIDPSLNFFGEGCKILVEGQMTDDGSATPDAVTCVTSELDIIERFGQGSVLTESLRKVFCTCKSGVSVYALPREDAAAGVKAVYTLTIAGPATTDGRVQLYMGEAEYAVDIGVDAGDTATDIAAAIVAAISPDFPYAATAAAGVITLTARNAGTIGNHLSVIYTNLGSCTSVTPEGVTVTFAQTTAGSVNPTPNDYATVVNECCFAVYVLSSDDTDWQENLRDWIRSAWDCSKPQCFGHGYVFNKGTLGQVLADGDNSAELSRLALPTTYPVLPYLTNAAYGALSACSTCNNPELNIQGQTFGLLSCINMPESCTPGWTFGEVTQLQANGFVVSGPSTTSGQGNYTSPYIYNDVTNYLRDEKNRPNATFRDASSRRLAAATGVALAEFLQQFNGLAVFTKNTNIRTGIIGTNPRLMLGKIRKWAQDNVGTLFSEFDNINEDIQLLTDFEVQPKCVGQPGIFHLNMRYRPPVRGARINVNMAPALFDNCDR |
| Baseplate Wedge 3 protein, gp30 | L1 | 286 | Agrobacterium Phage Milano | MNVLIPGIDGMVSAGTLEYTGCCPPSFADVDECTLATAFVGLLPSGPLWDRPKYEAITTITEAGNCAACWTTDHCPTLVDYAVNVGARLASVIERTIWPAVRESDPFTAVTSTADWLNRFDWVNCFETSCRSKELGEKTPIEYMTDCGPVYVKITYPPSLQQAFESALIKSLERLSMGIIKNLAAINFVIEPLKVRVVPVDTTDACENETLCVVLEKTSDFFDGVNANTCGIPTPVAAYIDRDVMQLPSDLDKYIWPGHMAAECIVRSLLSHVSRFCLIRTEQAPD |
| Tail Spike protein, gp124 | P1 | 587 | Agrobacterium Phage Milano | MAKLRPLQVGGVPGCANIPGGEDCQCWPEWTADNGYFFGDVVQQGGVLYYATRDVPPGTPFLAADWAPYRPAATAIPPHNENSTYFQYQPVAYNDKLYTARTDLPPGPFDPANWQEISVEGLVEVVDSATIDFTGTGAAGDPVSADVKLDPDPDNLLSATANGLILTADNIPFPDPSQILISEEVTLRVDYVTGDDATADGTLAKPFATVSAAIGVATTGDRVEIYPGTYIGNFAPKSDVTVVGLEGVVIDGDVTIAAGVSGALVDGLFVDGSVLVNGANGSVTFRNSRVTENVLATGNNTGVYRFENCDIETAAIVNGTGNAEFIFSGGVSENDFFLNSPGTMIVENRSRVKAVLHEAGNMIVQNIGVIESLASTPDNGFLAVMSSSLFDPLTSTYGTISKTGLCPFVFQDFGRDNTDTTALNGPKFIVSNGRDVHGNYDPAFYALPNGQTLNSHFAGIDAALETLQEYSPLDRLVPVDLGFSFTGGWTDGETIGAHVVSRSTIVPENMAGSVFSTDSSTLDGVLNIVVGPSVVGTVTIVDGIATFASSSFNLDPGQTVRVVTTSDGTFDYAALTLVGHREVVYVN |
| Tail Spike protein, gp124 | Q1 | 587 | Agrobacterium Phage Milano | MAKLRPLQVGGVPGCANIPGGEDCQCWPEWTADNGYFFGDVVQQGGVLYYATRDVPPGTPFLAADWAPYRPAATAIPPHNENSTYFQYQPVAYNDKLYTARTDLPPGPFDPANWQEISVEGLVEVVDSATIDFTGTGAAGDPVSADVKLDPDPDNLLSATANGLILTADNIPFPDPSQILISEEVTLRVDYVTGDDATADGTLAKPFATVSAAIGVATTGDRVEIYPGTYIGNFAPKSDVTVVGLEGVVIDGDVTIAAGVSGALVDGLFVDGSVLVNGANGSVTFRNSRVTENVLATGNNTGVYRFENCDIETAAIVNGTGNAEFIFSGGVSENDFFLNSPGTMIVENRSRVKAVLHEAGNMIVQNIGVIESLASTPDNGFLAVMSSSLFDPLTSTYGTISKTGLCPFVFQDFGRDNTDTTALNGPKFIVSNGRDVHGNYDPAFYALPNGQTLNSHFAGIDAALETLQEYSPLDRLVPVDLGFSFTGGWTDGETIGAHVVSRSTIVPENMAGSVFSTDSSTLDGVLNIVVGPSVVGTVTIVDGIATFASSSFNLDPGQTVRVVTTSDGTFDYAALTLVGHREVVYVN |
| Tail Spike protein, gp124 | R1 | 587 | Agrobacterium Phage Milano | MAKLRPLQVGGVPGCANIPGGEDCQCWPEWTADNGYFFGDVVQQGGVLYYATRDVPPGTPFLAADWAPYRPAATAIPPHNENSTYFQYQPVAYNDKLYTARTDLPPGPFDPANWQEISVEGLVEVVDSATIDFTGTGAAGDPVSADVKLDPDPDNLLSATANGLILTADNIPFPDPSQILISEEVTLRVDYVTGDDATADGTLAKPFATVSAAIGVATTGDRVEIYPGTYIGNFAPKSDVTVVGLEGVVIDGDVTIAAGVSGALVDGLFVDGSVLVNGANGSVTFRNSRVTENVLATGNNTGVYRFENCDIETAAIVNGTGNAEFIFSGGVSENDFFLNSPGTMIVENRSRVKAVLHEAGNMIVQNIGVIESLASTPDNGFLAVMSSSLFDPLTSTYGTISKTGLCPFVFQDFGRDNTDTTALNGPKFIVSNGRDVHGNYDPAFYALPNGQTLNSHFAGIDAALETLQEYSPLDRLVPVDLGFSFTGGWTDGETIGAHVVSRSTIVPENMAGSVFSTDSSTLDGVLNIVVGPSVVGTVTIVDGIATFASSSFNLDPGQTVRVVTTSDGTFDYAALTLVGHREVVYVN |
| Short Tail Fibers, gp31 | S1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Short Tail Fibers, gp31 | T1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Short Tail Fibers, gp31 | V1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Short Tail Fibers, gp31 | W1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Short Tail Fibers, gp31 | X1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Short Tail Fibers, gp31 | Y1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
| Baseplate Centerpiece, gp25 | U1 | 398 | Agrobacterium Phage Milano | MAGPCYNPDAEYLPASFKGFSFDADSSDSDHGRNGAEAEFVFGERTGYADLGIKIKSYQLRARFQTNDHIAQTNAFIAVLESPGPGLLVHPTRGTVFAACRSARVTDSKVDAAGVTYVELDFVEANSVLSGFGLVGNLVALALAPIITATEGSFKRHFSPDNIRYYNTEAVVSTMAQAVTQVQNAYLAISGNDTSQDKWTTVRDFRNVLIDEFTFYSPANAWNVLRNGFAILDAAATGSDKFNVLRNLINWSSTHSDLDGESGDAENAIFTAVRVLSAAYLAKAYTETAATTVNEGLTQYDLIAAVLEQEAQIAKDDCHDNEFFLQIRAFAVDVARVMVNRAYNSPSLIVYAFPGTVHGLVAAWEIFGDAKRSRDLEARNNGSPWAVGPKIISERVRA |
| Short Tail Fibers, gp31 | Z1 | 300 | Agrobacterium Phage Milano | MAGIFFSGGLACNLTVNAACGIATTGDDCPALYYPPKCNVQVDPLQMNAVISEIANAINAFGNTYDCSRLDNLKQVLNRARNICDLPPFGDAPDMDDRIAGCFDGQSSTVTVQQLVNLVLGQVGTLCQLPQIGAIQDDDWLAGCIDGAARIVPFAAVRSALGGGGGVIGGVIPQNQLFDSWRAGGFWDVSQSTAGRTAFVFRSRKEGIGITVSELFIATGGGAYQSISEWEPSTFAYVPTGETTAIDGGRIQAVAIAFKKGNQWYAKAGDIILPLGGDDGVIRVRTPGYQRLQIWDGVQV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-01-05 Deposition Author(s): Egelman, E.H. , Esteves, N.C. , Kelly, R.J. , Kreutzberger, M.A.B. , Leiman, P.G. , Scharf, B. , Sebastian, A. , Sonani, R.R. , Wang, F.