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FASTA Sequence PDB Format mmCIF Format
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8FNL

Structure of e138k/q148k hiv-1 intasome with dolutegravir bound

PDB DOI: 10.2210/pdb8fnl/pdb

Classification: VIRAL PROTEIN/DNA/INHIBITOR
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct

Deposited: 2022-12-27
Deposition Author(s): Li, M. , Lyumkis, D. , Passos, D.O. , Shan, Z.L. , Strutzenberg, T.S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

8fnl
Literature

Structure of e138k/q148k hiv-1 intasome with dolutegravir bound

Li, M. , Lyumkis, D. , Passos, D.O. , Shan, Z.L. , Strutzenberg, T.S.

Primary Citation of Related Structures: 8FNL


Proteins
Molecule Chains Sequence Length Organism Sequence
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera A 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera B 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera C 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera D 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera G 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera H 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera I 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
Lamina-associated polypeptide 2, isoform alpha,Integrase chimera J 364 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GSHMPKRGRPAATEVKIPKPRGRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGQSRAAVGRKATKKTDGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQKFGIPYNPQSKGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (27-MER) e 27 NA ACTGCTAGAGATTTTCCCGCCCACGCT
DNA (27-MER) k 27 NA ACTGCTAGAGATTTTCCCGCCCACGCT
DNA (25-MER) f 25 NA AGCGTGGGCGGGAAAATCTCTAGCA
DNA (25-MER) l 25 NA AGCGTGGGCGGGAAAATCTCTAGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-27
Deposition Author(s): Li, M. , Lyumkis, D. , Passos, D.O. , Shan, Z.L. , Strutzenberg, T.S.