8FNI
Cryo-em structure of rnase-treated resc-b in trypanosomal rna editing
PDB DOI: 10.2210/pdb8fni/pdb
Classification: RNA BINDING PROTEIN/RNA Organism(s): Trypanosoma Brucei
Deposited: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Cryo-em structure of rnase-treated resc-b in trypanosomal rna editing
Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Primary Citation of Related Structures: 8FNI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-editing substrate-binding complex protein 13 (RESC13) | 13 | 320 | Trypanosoma Brucei | MKRTPVRVLNATVAFLQGWGGGSSGGGWGSDDGPGNGSGGGGSGGRGGWGSGGGGGGGWGSGGGGNGGWGSGGGGGGGWGSGGGGRGSGGGSNGGWGSGRGGSAHGFSNPWNDGDAGWRGAATGARANRGRGGFRRGRGGADDGVWGQPNVVDEEAWTAAPPSFNPPVRRVDPLTLTAVEVEIDGIKKLVGQRVQVSGLSDETTWHTLKDHLRQAGEVTFCKVFSGGRAVVEFVTPEDAARAITELQASELEGATLFLREDREDTVLVNTRRKIREVRDAQLRARKEEMEKKRREQAIAEGDCSAPAPPAEVAGDASQKV |
| RNA-editing substrate-binding complex protein 14 (RESC14) | 14 | 366 | Trypanosoma Brucei | MRSGRKLGCFTNRLRLPFFSPCSQITALTASHRCKSYVLKFLRGQLPEDLKDVNGALGCLYGTLPDVDEFGQFVISPDVVNSFHQFGYVKMPIPVLDHQQIDKLADEVNELANNVEHHPKTERLYATSLADLTGGPLFFCQGQWRAAWGMHDLIYLPTITVAASQILNNSLVRLWYDEVFMKAARTGPCVPWQQNYARWQHTKPVNHVTVMIALDTMNKDRGAPCLVPGSHRWREGGLLPPVSYDPTKDEAHQLNTIWEIINEEEGEMLMDTPPVTVDLRRGEALLIHPLTLFATHGNRSLDAVRCCFIHYMGEKTYAVQNGPLLPHTTKFQADAMIQGPFYPVVFDPAMTEELTMLPTAPSEEEA |
| RNA-editing substrate-binding complex protein 5 (RESC5) | 5 | 402 | Trypanosoma Brucei | MLRHTSRNNALHAFVRSPHYRTIPSAGPNGIVVNRDMLVHQFRDFYKTLQHCSLVDKVHLMSERPSVEALRVADQMVSIGATFLEMPLTGMEHRATEFMESMRYVRGAGGPSTLASYLQDTENCRCNSGDVVCLPNGIAVGHGPRTNAVAHTTLKQLFEVKDDQFSFDVFTLEQEGDAPPLGDYFGFAGSNVLLTWKDEHGLLAVDQYQQKQPHTEMNVVYLEPGCHFLSFYGVDHTIDVLVQKGYERSMDSIAAAGLNPIPVQWSEMDKLGISMRAAVLPLKFFKANVGGMLSRNKSRGARWQTHQLQKGSGSGSASSGASAAGSSGASASSGASAAGSSGASAGHHHHHHHHHHSGSEDQVDPRLIDGKASAWSHPQFEKGGGSGGGSGGSAWSHPQFEK |
| RNA-editing substrate-binding complex protein 6 (RESC6) | 6 | 516 | Trypanosoma Brucei | MRSALRRCILRHQGCLRMKQSLSAFPTVVTGMTRHQGNSLIGTTHGAELSLAGDPQSVSHLSARNIATEALQMKKLHQERGGNPMLAQQARRVLFATSIAGQNLDARSVALLLNTAVYFGMESDAKLVRECIDYCLKNDKLITVDVLPIVVTACATLKSRDAREVIEMQAQKAARNAKFLDAKDVTNIISAFSKTGINHEKLFAFLSRRVQTLARVGEFEAAHLVILANAFSRLRYRDKFLFGAIARRAMSLRERVTVNELVPLIVAFSKIGLKDPKLSKRFATKAMEYVDQMNAEQVASMFMAFAYFGIRYDQLFGVLTNRAVELIDEFNAQYISTTLNAFQRIGINNPELFDNLAERALAVVQDHDARDISKTVTALAHFGLKDEELFKRLASHAASIADQFDAMGLVNTAHAFARTNFLQQDMAVALSERSVYVCRLLDAGETRRLLWALAKFQVRDPKILTPVFNRCLALHYDFFADPTGSEEIEEIFDFYGPNFCPPLYQLYISRGSTPQA |
| RNA-editing substrate-binding complex protein 7 (RESC7) | 7 | 174 | Trypanosoma Brucei | MRSSRGILFLSGAFAIRGMSAYHSYQRLDTVSHTSKVYSLQMQRQTVHFTPITRLGVEATANPTTATNATGQTGDGDGATALDVAMRVNKLKRLHQTGGGPSGKKQVELDAWRDLNNLTEAQINSAEGKAVSLLLNSWAYFAKYWEKGAEGPSASLSEVTPSNDSSSAGEHGTQ |
| RNA-editing substrate-binding complex protein 8 (RESC8) | 8 | 545 | Trypanosoma Brucei | MLNVLSSTASAALATVVVARPSALHLIFERCKLNLVEFTAQDVYQICTTAYNMDTLGMLQDPDFMRGLHDAFRRSDQTVISPFQANLIADTFRKVGINSMPKEVSVPEEDAISPESLILVLRNMNITKQRDERKINEVLKLMFPILDEFSPTQLSLTVTELARLKSTNADFVGKLAKRIMEYNDDLSALDISSAAVSLAYCPGISHNILYRMMQIVEERMGEFQPEDYINVLHALNTLGPKFVNTFRKIVECGLQHVENMDAVTLTNYMVCFSTMDYKQREHIDIYADALVEVATDLSEKDLVMAFIALQRLRLLSDTMFGTMASCVIRYAAKMDPRNIAPIMDICSTVPHASDHLMKVLMDRAVECTRILTANQLGDILDILGLYPPAREHPLVQLFGKQARLRLDLMGPDALANATRGLANLGYADPEYYAQAAETGFRYGFKDWTLLEPMLMGLSITGQCPPTMVRVLGSHIAPMARSMSLMEIERANRYLRRLGCEDDFVYKAMASRVLQFVKEVTPEMPEDLQVLLQRGAVEPGAAPGVM |
| RNA-editing substrate-binding complex protein 9 (RESC9) | 9 | 872 | Trypanosoma Brucei | MLLPTLERLLERCGRPIFSNVEDVRMVMASLLDISAYVDRASTKVIAKPLRRFCHKDPDTVASVMEAVPIDAAEPTHGRRAAMLLRCLPKHSCDEVIWERAVAATLAGLKSRKWDLHDYRVAMAHAGRGGRHAPALAAAAEEFVSSSARTASQSELPALLVILTSLPELKRSPCLQVAADRIVQLSEILSPAAIGQICASVNKVSFRHTAMAIALQEEAIRFAEESDLFSAVQLFSFICQQEKEAISPDAVKCLAERVIEGKDLDQETVSVLCRALRSIPRPHRPELLREIGEMMEFLGGEVKELLELPVAKGGLKGDVSAGDIQSFISKFLSLDGLLPADHDRPGTYMAAIVACVDYITERLEDIVSDENPPFSIIPHLLNINMEETRRCGQAIIREAAEQGIHFPTLQVFRFLLALGDHNMRDQRVYRHLRNEFAKTASDIPMIQLCAALKCFVRGLMQNVETQSLDEQVEHELEKEDMDAFLRFCVENLRRGFADGMEVKCVMAATESLYQLGYTSTEFYEQVARYLGSKCSSASASVNSSETATAVCLALGEDILDRHPDVHTFLLEVEKSGLKGEASLSPTEWMNKNDPANFITPLTEIQQEGWNIINRMVETRAADTEKLTALANEYVAILKSTRVDDLKYFFGVFEEKVFKQDRILKQCLDYLVESNAAVKLSATSIGAMLNSLAAIRFTYHRSVKQFMIAISTEQWSEMDASPLVKIVSAMAKLSLRLPQVLVHVGDRLLDVYTFLSPLDTALVINSLQSIGYGNDEVLMMLMRHAASSARRWDEVSLTLLFGASGVHRLLRNVEVAAPLLEQAAGKTSSPHLRQRIAASLRRSALPRALVQSSTSLLTGGAHEVVNNPPLQLV |
| RNA-editing substrate-binding complex protein 10 (RESC10) | 10 | 543 | Trypanosoma Brucei | MRRRVVLCCQDVGSLLSSKHSVHSGIGYHERVFSRNLLYRRYPVVTVLPKAGFTVLDTKRWIASSGPPVTGSPLSPVTNPSLNVGTGGGEAVAMEGPLPVSYSPGSGVNGSLPVTSTAITAHCDVLSECVAKADELAVQLKAQNALSASAEILTQEGMEEFVEELKTSATNEMTALVKQMQTTPLLQRAGMHELRRTLYYTTSLKERDWLEEKQYTAAMRMLTVEVLRRDGDGVLSADDVLYVTTHVVTANFYNRHLWNRMEKSLLKFSNYENIDMSSVKAFSTRLFKTRRGCAKETLDIRRKVLLAMSRRVGVLANDFDLPSLLGVLQCYTVHDLTPFHLEPLAIRATNHVGDFTPHECATLAHVLRKWRTMRLEVCERLVERICTSDQLTHHMANAAMIAIRTCFNQVSDGGRNAMNAEPTRQKLRAMGEQIGCRLDEVEYPALPVILSILDVVVTLKIYVPKKCLQVIFSQANDMVAIVMEQKDDLVDPKTGKRVRPITAEEGRQLQALLSHYGNDLAPELSQRMKEAFREGVLPDEASL |
| RNA-editing substrate-binding complex protein 11 (RESC11) | 11 | 934 | Trypanosoma Brucei | MYRLYRRTVGYQSLHQRLSACHVMCRHVSTDNSDGTTPPKPRRSGIRRVVPSDEEMAELHDLEQEVASTTSSRSKQSALSGVMVEPMRFSTSGGSGMEGDGDDLGELEAEGDEEGVGTNSLAEAENVYKRHNDGGALEKQGLAIPPSGKPTDPLLANRDDEGEGGAVPLSQAEEMTVSRSTLERQACVRSLSLEELVEAVTLYLRATKNPRLVSADEEHIFFPVLMERLNEFHVSQLLDVVECHWARSTLVRYGTTFKDMVRDRIALIATAAAKSASKRPAAAGKSGNDNRDGGAVEEEADDYDEQGDAVYVHEAEEKTSDLIILRAAEEMSPETVLRCIIVMGMSAGRRKRDLQFFQAMGMFLVHHINHYKDPHELVRVLTAFARAKIVPPKRFLALLGRRFAVLNKRKKLGSLPSYRAFVNLYKMGHDQMNTFRFLADCILETIDSNIKAEKKRLRLAQLQSSSNITAATTNENGATNESGCGGSTSSSNPTVTNITGAGDLKATHTSEGASDVAFIGDLDPHLLQNLRARERFKRLTELKPSMFTKLLLVLARFGAPHQQYLRPTTVPLILPTLRAFPPPSFTRLLRAMSLFRTTDLDLIEPVIDFMADSLGPTNVVPADVLQMVRLVAPPDVPVPRNLVKLISLCEAVYSSSASFSHSDGKSSDSADAAACAMTTLSPIRPGDMCAVAVVLLKIQMKDDVPLEALDPLTRLMEFFAERMYLLMKLHIVSLTHVDVFTDLCRQQQHPDVSGHIERLCAERRRVNDAEGDDEYYSQLDIDVRETLHRILIVNDYNTYGQYRPTPGVLQVDFKQALTEVSAFDVLEAADLFAQAFSNALKPAVERHLSRSIIAKLDGGGEEVITEGNSIVLRPPRELLLTREDLGKFVCLLQRTPLRRVRASPVVWRFVEEKAKKLGMDDVLRVVENKLATAV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.