8FNF
Cryo-em structure of rnase-untreated resc-c in trypanosomal rna editing
PDB DOI: 10.2210/pdb8fnf/pdb
Classification: RNA BINDING PROTEIN/RNA Organism(s): Trypanosoma Brucei
Deposited: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.5 Å
Cryo-em structure of rnase-untreated resc-c in trypanosomal rna editing
Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Primary Citation of Related Structures: 8FNF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Mitochondrial RNA binding protein | 5 | 310 | Trypanosoma Brucei | MLRHTSRNNALHAFVRSPHYRTIPSAGPNGIVVNRDMLVHQFRDFYKTLQHCSLVDKVHLMSERPSVEALRVADQMVSIGATFLEMPLTGMEHRATEFMESMRYVRGAGGPSTLASYLQDTENCRCNSGDVVCLPNGIAVGHGPRTNAVAHTTLKQLFEVKDDQFSFDVFTLEQEGDAPPLGDYFGFAGSNVLLTWKDEHGLLAVDQYQQKQPHTEMNVVYLEPGCHFLSFYGVDHTIDVLVQKGYERSMDSIAAAGLNPIPVQWSEMDKLGISMRAAVLPLKFFKANVGGMLSRNKSRGARWQTHQLQK |
| RAP domain-containing protein | 6 | 516 | Trypanosoma Brucei | MRSALRRCILRHQGCLRMKQSLSAFPTVVTGMTRHQGNSLIGTTHGAELSLAGDPQSVSHLSARNIATEALQMKKLHQERGGNPMLAQQARRVLFATSIAGQNLDARSVALLLNTAVYFGMESDAKLVRECIDYCLKNDKLITVDVLPIVVTACATLKSRDAREVIEMQAQKAARNAKFLDAKDVTNIISAFSKTGINHEKLFAFLSRRVQTLARVGEFEAAHLVILANAFSRLRYRDKFLFGAIARRAMSLRERVTVNELVPLIVAFSKIGLKDPKLSKRFATKAMEYVDQMNAEQVASMFMAFAYFGIRYDQLFGVLTNRAVELIDEFNAQYISTTLNAFQRIGINNPELFDNLAERALAVVQDHDARDISKTVTALAHFGLKDEELFKRLASHAASIADQFDAMGLVNTAHAFARTNFLQQDMAVALSERSVYVCRLLDAGETRRLLWALAKFQVRDPKILTPVFNRCLALHYDFFADPTGSEEIEEIFDFYGPNFCPPLYQLYISRGSTPQA |
| RxLR effector protein | 7 | 174 | Trypanosoma Brucei | MRSSRGILFLSGAFAIRGMSAYHSYQRLDTVSHTSKVYSLQMQRQTVHFTPITRLGVEATANPTTATNATGQTGDGDGATALDVAMRVNKLKRLHQTGGGPSGKKQVELDAWRDLNNLTEAQINSAEGKAVSLLLNSWAYFAKYWEKGAEGPSASLSEVTPSNDSSSAGEHGTQ |
| Mitochondrial RNA binding complex 1 subunit | 8 | 545 | Trypanosoma Brucei | MLNVLSSTASAALATVVVARPSALHLIFERCKLNLVEFTAQDVYQICTTAYNMDTLGMLQDPDFMRGLHDAFRRSDQTVISPFQANLIADTFRKVGINSMPKEVSVPEEDAISPESLILVLRNMNITKQRDERKINEVLKLMFPILDEFSPTQLSLTVTELARLKSTNADFVGKLAKRIMEYNDDLSALDISSAAVSLAYCPGISHNILYRMMQIVEERMGEFQPEDYINVLHALNTLGPKFVNTFRKIVECGLQHVENMDAVTLTNYMVCFSTMDYKQREHIDIYADALVEVATDLSEKDLVMAFIALQRLRLLSDTMFGTMASCVIRYAAKMDPRNIAPIMDICSTVPHASDHLMKVLMDRAVECTRILTANQLGDILDILGLYPPAREHPLVQLFGKQARLRLDLMGPDALANATRGLANLGYADPEYYAQAAETGFRYGFKDWTLLEPMLMGLSITGQCPPTMVRVLGSHIAPMARSMSLMEIERANRYLRRLGCEDDFVYKAMASRVLQFVKEVTPEMPEDLQVLLQRGAVEPGAAPGVM |
| RAP domain-containing protein | 10 | 543 | Trypanosoma Brucei | MRRRVVLCCQDVGSLLSSKHSVHSGIGYHERVFSRNLLYRRYPVVTVLPKAGFTVLDTKRWIASSGPPVTGSPLSPVTNPSLNVGTGGGEAVAMEGPLPVSYSPGSGVNGSLPVTSTAITAHCDVLSECVAKADELAVQLKAQNALSASAEILTQEGMEEFVEELKTSATNEMTALVKQMQTTPLLQRAGMHELRRTLYYTTSLKERDWLEEKQYTAAMRMLTVEVLRRDGDGVLSADDVLYVTTHVVTANFYNRHLWNRMEKSLLKFSNYENIDMSSVKAFSTRLFKTRRGCAKETLDIRRKVLLAMSRRVGVLANDFDLPSLLGVLQCYTVHDLTPFHLEPLAIRATNHVGDFTPHECATLAHVLRKWRTMRLEVCERLVERICTSDQLTHHMANAAMIAIRTCFNQVSDGGRNAMNAEPTRQKLRAMGEQIGCRLDEVEYPALPVILSILDVVVTLKIYVPKKCLQVIFSQANDMVAIVMEQKDDLVDPKTGKRVRPITAEEGRQLQALLSHYGNDLAPELSQRMKEAFREGVLPDEASL |
| Phytanoyl-CoA dioxygenase family protein | 14 | 366 | Trypanosoma Brucei | MRSGRKLGCFTNRLRLPFFSPCSQITALTASHRCKSYVLKFLRGQLPEDLKDVNGALGCLYGTLPDVDEFGQFVISPDVVNSFHQFGYVKMPIPVLDHQQIDKLADEVNELANNVEHHPKTERLYATSLADLTGGPLFFCQGQWRAAWGMHDLIYLPTITVAASQILNNSLVRLWYDEVFMKAARTGPCVPWQQNYARWQHTKPVNHVTVMIALDTMNKDRGAPCLVPGSHRWREGGLLPPVSYDPTKDEAHQLNTIWEIINEEEGEMLMDTPPVTVDLRRGEALLIHPLTLFATHGNRSLDAVRCCFIHYMGEKTYAVQNGPLLPHTTKFQADAMIQGPFYPVVFDPAMTEELTMLPTAPSEEEA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.