8FN6
Cryo-em structure of rnase-untreated resc-a in trypanosomal rna editing
PDB DOI: 10.2210/pdb8fn6/pdb
Classification: RNA BINDING PROTEIN/RNA Organism(s): Trypanosoma Brucei
Deposited: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.7 Å
Cryo-em structure of rnase-untreated resc-a in trypanosomal rna editing
Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.
Primary Citation of Related Structures: 8FN6
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| gRNA | g | 46 | NA | UAUAUUUUUUUUUUUUUUUUUUUAAAAAAAAAAAAAAAAAAUUUUU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-editing substrate-binding complex protein 1 (RESC1) | 1 | 473 | Trypanosoma Brucei | MLRLLRRSIVGSTFNIMVRRQNQGSVSQGALNMRDQQAAAAENVTPERVWALWNEGNLFSLSLAQLQGFLSRCGVRTDPAAKKAAVVRQVEEYLHSKDTTVKGGGQGAASPQQHQQHGQQGGYGRWNQASVMQPETLLDLSQAGFYEGAANMVPKAFQLLVSDTAPDVVVSRVNTTAFPGFPSNTECYTLGASEKDVAIRSRYSKVLQWCCLNMSNLQMDGELYVDFGKLLLKPSVMRKNRRIVSSYTLQQRLQVNHPYTWVPTLPESCLSKIQEQFLQPEGFAPIGKGVQLTYSGTIKRSKDQLHVDLDNKGKVLAVNSAWVNLQTAWCTHAKGPDVRLLLRSRPPIRRQDVELFASTPIIKLADDDVADVLPPEHGQLVYLSEDETRLFERVSDRGVTITVREVKRQPLIILRDEEEDPRVEYSLSAHIPANAAKATDVRAVGLTAFELAGRLAGLVAEDFVREYGCEAKL |
| RNA-editing substrate-binding complex protein 2 (RESC2) | 2 | 492 | Trypanosoma Brucei | MLRARLKIFSALNGATSAFSRAVAPLQIATRQQSFSAAAPAASGDFSHITRNTVWGLWNEGNLFSLSVPELAFFLQEHCRVANVDPRAKKSALVRQVEEILSAEQQASATVPQEDNPHAIVVTDYDRAEDALEEADEYGDWGAEPGFEDRRELDFMELSPGRMGERYDPLSPRAFQLLHSETATDVGIASIDPSKLPGQSKVKNALAAIHVAPNDANKMRFRMAFEWCLMNIWNMNMPGELNIGAGKALYYRSVAKQNRNVMPLWTVQKHLYAQHPYAWFAIASESNVAAMESLAAALNMSIQQERTTSYKVTIRRMAEFFDCELNGQLKCTMMNKPWDRFFVSHYIRSKMPDLRYVVRARHPIKKRIADAYLEADILRSTRDSVQSVLSPELGDVVYCCERVVRKWAKKTATGVTLQLVETKRTPLIITKAGDEGERLEYEWIVPLPQQAERIDIAALTDELWEYGNKLAAALEEGMEELMVHTMTAVSAY |
| RNA-editing substrate-binding complex protein 3 (RESC3) | 3 | 482 | Trypanosoma Brucei | MSNPFEKVARGIAFKMRSKVHKQGYSNTVMAQQARRLSPTGLLAMERLTELTALQQRHQCTFDPALRSKATQILRTLPLLSIDEDPYFTHTQRALRLAAYFGAVDLPVTYALINQHTKNAFMLDAFSMASFFYTLAKLKHPQTKEIVGILLPRLREVAPELIAREAVHILRLLCSIQMADAQLVKVVTETVVATAADVPLRDARQCAFILSETFPEEAQRILGAVEHRLCDDIDMNADANEVKTTILDVCRVVSATCKGPRRLLNSVARRSMELLPQLTPLDVAFVLKAFHLSSYRHLRLLRVLSSSLAASFPTSNVTKEHGLAASIVVQSLAHFYLSGCEEVVVTLVNASVNVLEGLNLALTLLACVRLRCVSPGVDPAVDALCSGAPMRRYVHNAHSMQVTSRILYGLAHAGRCRSDEEVAIVLPLLKSVVRTPGALRDDCRGFLLDAVTALGADGECSNDALQEQVRKVYERLSQDGGK |
| RNA-editing substrate-binding complex protein 4 (RESC4) | 4 | 1087 | Trypanosoma Brucei | MNGRLYCLIRRITSPPVATRLIKEELCLSMAAIARLPLRRDQLAHVTNTEAITTRAQRISHLCTPTELGMIAEGAEALSCNRFDLADALIDGAYESVRRAASSTRLSHVSAIARYSASIKTYGNETITTLLKAGASLLQKNDSVPVLKSFLGVAQSHLTDGEMRVLIDEMCAKATEEQRLCINSIGTQSLAKDAAKCGEETLTKGNEDGDETAVDDEETQAWDMLRARQWMLQLVRCGKPPTAAEAVQAMELYAHFAVRDFVLHEKIEDLVLLVLPTGNKFHLNEMHKIVLRSPNLFPRVRNTLGQDHSGVSDVHRADRGVEWSDDPASSLTTTYTTSRAYSMLLLGQRLSEDIMFDVVQEQSETIPVDVAAQAACLFAEKGDIPEGVILRLSAELEHISPQGVTAFVRAARRDSSGALLPHYAAVLNRFTERDLCDTPLETLLQMCEVFALPAPRGTSEGDNDSINESQSKFQKALIVRLFSVIQGSRDVPFLCKVAKAVRAFDANDELIQFVCSSICAQGALSECEALIAFDMIRCCDFVYEPLLDAMEPVFRRLVESVSAMLEGKSTINDVEVRRCACFATLQSEFDCPDFETLASLLVHTVEKNVTGCPVELIPSVGLLCVRTRRTSALYIVGNKLEGNMQQLSDDAIGELARLLVGTENLATKELAVEFQSVVVSRLLRQQSLPPDVVALSAVVWLRQGDKVGTIDERSVDYIIKWMYAIGSSVYTDLCLAVHLSASVESLSNALIDDLPRRLELLTTNEMANAIFGLGEVSDMGARLSHQLVAERCSDYVVDHSQEFWSGKVIARLLYGFSRMHCTKRSLYNVFATRLAHRPVFSLLDQEAISFAIAAFGRVKYLDKKLFDRFTRWILDHSKDLNAAELLLTIRGVSRVMLLNDQLYDDLGSKAAEKVKEFPIESQCVLLSSFGSLGVEHERLASRMVSSIAENREELTDATKAVDVITSLWSMNYDVEDDKHVAQLADWVVQRAEELTDESIGKLCLVLSDTNWRHVPLVRAIAEQSVRLQGQQSISPKCCREVLDVLGTFMIHHQGARENLSALGRSISKERIQLSEEEEQHLQLLLRR |
| RNA-editing substrate-binding complex protein 5 (RESC5) | 5 | 402 | Trypanosoma Brucei | MLRHTSRNNALHAFVRSPHYRTIPSAGPNGIVVNRDMLVHQFRDFYKTLQHCSLVDKVHLMSERPSVEALRVADQMVSIGATFLEMPLTGMEHRATEFMESMRYVRGAGGPSTLASYLQDTENCRCNSGDVVCLPNGIAVGHGPRTNAVAHTTLKQLFEVKDDQFSFDVFTLEQEGDAPPLGDYFGFAGSNVLLTWKDEHGLLAVDQYQQKQPHTEMNVVYLEPGCHFLSFYGVDHTIDVLVQKGYERSMDSIAAAGLNPIPVQWSEMDKLGISMRAAVLPLKFFKANVGGMLSRNKSRGARWQTHQLQKGSGSGSASSGASAAGSSGASASSGASAAGSSGASAGHHHHHHHHHHSGSEDQVDPRLIDGKASAWSHPQFEKGGGSGGGSGGSAWSHPQFEK |
| RNA-editing substrate-binding complex protein 6 (RESC6) | 6 | 516 | Trypanosoma Brucei | MRSALRRCILRHQGCLRMKQSLSAFPTVVTGMTRHQGNSLIGTTHGAELSLAGDPQSVSHLSARNIATEALQMKKLHQERGGNPMLAQQARRVLFATSIAGQNLDARSVALLLNTAVYFGMESDAKLVRECIDYCLKNDKLITVDVLPIVVTACATLKSRDAREVIEMQAQKAARNAKFLDAKDVTNIISAFSKTGINHEKLFAFLSRRVQTLARVGEFEAAHLVILANAFSRLRYRDKFLFGAIARRAMSLRERVTVNELVPLIVAFSKIGLKDPKLSKRFATKAMEYVDQMNAEQVASMFMAFAYFGIRYDQLFGVLTNRAVELIDEFNAQYISTTLNAFQRIGINNPELFDNLAERALAVVQDHDARDISKTVTALAHFGLKDEELFKRLASHAASIADQFDAMGLVNTAHAFARTNFLQQDMAVALSERSVYVCRLLDAGETRRLLWALAKFQVRDPKILTPVFNRCLALHYDFFADPTGSEEIEEIFDFYGPNFCPPLYQLYISRGSTPQA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-27 Deposition Author(s): Alvarez-Cabrera, A.L. , Aphasizhev, R. , Aphasizheva, I. , Hu, J.J. , Huang, L. , Lee, J.K.J. , Li, X. , Li, Z. , Liu, Q. , Liu, S. , Suematsu, T. , Wang, H. , Yu, C. , Zhang, F. , Zhang, L. , Zhao, X. , Zhou, Z.H.