PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8FI9

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody wrair-5001

PDB DOI: 10.2210/pdb8fi9/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-12-15
Deposition Author(s): Jensen, J.L. , Joyce, M.G. , Sankhala, R.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.2 Å

8fi9
Literature

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody wrair-5001

Jensen, J.L. , Joyce, M.G. , Sankhala, R.S.

Primary Citation of Related Structures: 8FI9


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPGSHHHHHH
Spike protein S1 C 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPGSHHHHHH
Spike protein S1 K 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPGSHHHHHH
Spike protein S1 O 205 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPGSHHHHHH
WRAIR-5001 Fab Light chain F 215 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 SYELTQPRSVSVSPGQTARITCGGDNIASKNVHWYQQKLAQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSYSGHHVLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS
WRAIR-5001 Fab Light chain I 215 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 SYELTQPRSVSVSPGQTARITCGGDNIASKNVHWYQQKLAQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSYSGHHVLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS
WRAIR-5001 Fab Light chain L 215 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 SYELTQPRSVSVSPGQTARITCGGDNIASKNVHWYQQKLAQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSYSGHHVLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS
WRAIR-5001 Fab Light chain N 215 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 SYELTQPRSVSVSPGQTARITCGGDNIASKNVHWYQQKLAQAPVLVIYYDSDRPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSYSGHHVLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS
WRAIR-5001 Fab Heavy chain G 223 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKLSCKASGYTFTSYSINWVRQAPGQGLEWMGWVNPSNGVTVYAQKFQGRVTMTRDTSTSTAYMELSSLRFEDTAVYYCARERDQLVVYFDHWGQGALVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
WRAIR-5001 Fab Heavy chain H 223 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKLSCKASGYTFTSYSINWVRQAPGQGLEWMGWVNPSNGVTVYAQKFQGRVTMTRDTSTSTAYMELSSLRFEDTAVYYCARERDQLVVYFDHWGQGALVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
WRAIR-5001 Fab Heavy chain J 223 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKLSCKASGYTFTSYSINWVRQAPGQGLEWMGWVNPSNGVTVYAQKFQGRVTMTRDTSTSTAYMELSSLRFEDTAVYYCARERDQLVVYFDHWGQGALVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
WRAIR-5001 Fab Heavy chain Q 223 Macaca Mulatta , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGASVKLSCKASGYTFTSYSINWVRQAPGQGLEWMGWVNPSNGVTVYAQKFQGRVTMTRDTSTSTAYMELSSLRFEDTAVYYCARERDQLVVYFDHWGQGALVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-12-15
Deposition Author(s): Jensen, J.L. , Joyce, M.G. , Sankhala, R.S.