8FE4
Structure of dengue virus (denv2) in complex with prm13, an anti-prm monoclonal antibody
PDB DOI: 10.2210/pdb8fe4/pdb
Classification: VIRUS/IMMUNE SYSTEM Organism(s): Dengue Virus Type 2 , Mus Musculus
Deposited: 2022-12-05 Deposition Author(s): Aleshnick, M. , Diamond, M.S. , Dowd, A.D. , Govero, J. , Kielian, M. , Klose, T. , Kuhn, R.J. , Larman, B. , Miller, A.S. , Mukherjee, S. , Pierson, T.C. , Sevvana, M. , Sirohi, D. , Speer, S. , Sukupolvi-Petty, S. , Zheng, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 9.8 Å
Structure of dengue virus (denv2) in complex with prm13, an anti-prm monoclonal antibody
Aleshnick, M. , Diamond, M.S. , Dowd, A.D. , Govero, J. , Kielian, M. , Klose, T. , Kuhn, R.J. , Larman, B. , Miller, A.S. , Mukherjee, S. , Pierson, T.C. , Sevvana, M. , Sirohi, D. , Speer, S. , Sukupolvi-Petty, S. , Zheng, A.
Primary Citation of Related Structures: 8FE4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope protein E | A | 394 | Dengue Virus Type 2 , Mus Musculus | MRCIGMSNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFRCKKNMEGKVVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
| Envelope protein E | C | 394 | Dengue Virus Type 2 , Mus Musculus | MRCIGMSNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFRCKKNMEGKVVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
| Envelope protein E | E | 394 | Dengue Virus Type 2 , Mus Musculus | MRCIGMSNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFRCKKNMEGKVVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
| prM protein | B | 81 | Dengue Virus Type 2 , Mus Musculus | FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT |
| prM protein | D | 81 | Dengue Virus Type 2 , Mus Musculus | FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT |
| prM protein | F | 81 | Dengue Virus Type 2 , Mus Musculus | FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT |
| prM13 Fab Heavy Chain | H | 221 | Dengue Virus Type 2 , Mus Musculus | AAQLQESGPELVKPGASVKISCKASGYTFTDYFINWVRQSHGKSLEWIGDFYPNNRGPTYNQKFEGKATLTVDKSSSTAYMELRSLTSDDSAVYYCARGLWDAWLSYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRVPI |
| prM13 Fab Heavy Chain | M | 221 | Dengue Virus Type 2 , Mus Musculus | AAQLQESGPELVKPGASVKISCKASGYTFTDYFINWVRQSHGKSLEWIGDFYPNNRGPTYNQKFEGKATLTVDKSSSTAYMELRSLTSDDSAVYYCARGLWDAWLSYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRVPI |
| prM13 Fab Heavy Chain | O | 221 | Dengue Virus Type 2 , Mus Musculus | AAQLQESGPELVKPGASVKISCKASGYTFTDYFINWVRQSHGKSLEWIGDFYPNNRGPTYNQKFEGKATLTVDKSSSTAYMELRSLTSDDSAVYYCARGLWDAWLSYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPRVPI |
| prM13 Fab Light Chain | L | 213 | Dengue Virus Type 2 , Mus Musculus | AIVATQSPAIMSASPGEKVTISCSASSSVSYMYWYQQKPGSSPKPWIYRTSNLASGVPTRFSGSGSGTSYSFTISSMEAEDAATYYCQQYHNYPRTFGGGTKAKSARADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| prM13 Fab Light Chain | N | 213 | Dengue Virus Type 2 , Mus Musculus | AIVATQSPAIMSASPGEKVTISCSASSSVSYMYWYQQKPGSSPKPWIYRTSNLASGVPTRFSGSGSGTSYSFTISSMEAEDAATYYCQQYHNYPRTFGGGTKAKSARADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| prM13 Fab Light Chain | P | 213 | Dengue Virus Type 2 , Mus Musculus | AIVATQSPAIMSASPGEKVTISCSASSSVSYMYWYQQKPGSSPKPWIYRTSNLASGVPTRFSGSGSGTSYSFTISSMEAEDAATYYCQQYHNYPRTFGGGTKAKSARADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-05 Deposition Author(s): Aleshnick, M. , Diamond, M.S. , Dowd, A.D. , Govero, J. , Kielian, M. , Klose, T. , Kuhn, R.J. , Larman, B. , Miller, A.S. , Mukherjee, S. , Pierson, T.C. , Sevvana, M. , Sirohi, D. , Speer, S. , Sukupolvi-Petty, S. , Zheng, A.