PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8FCJ

Cryo-em structure of cascade-dna (p23) complex in type i-b cast system

PDB DOI: 10.2210/pdb8fcj/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct

Deposited: 2022-12-01
Deposition Author(s): Chang, L. , Wang, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.83 Å

8fcj
Literature

Cryo-em structure of cascade-dna (p23) complex in type i-b cast system

Chang, L. , Wang, S.

Primary Citation of Related Structures: 8FCJ


Proteins
Molecule Chains Sequence Length Organism Sequence
Type I-B CRISPR-associated protein Cas5 A 212 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MIAPLILYLDVPFTTFRESHAREMGKTYPVPPPATVYGMLLSLVGETNVYRHCGVELAIAMLSSPKKSRILRQMRRFKNADFSHPENVIPCYQEILSNLKCLIWVRSDEEKIQPSLRERIQLAFDHPELVRRFGCLFLGESDQLIKTIKLAREDYLEGVRQWAIRDNRGRLTLPYWVDHVGSRNTRFLRYRIEEMDRLSPPDLAWTMVQSPI
Type I-B CRISPR-associated protein Cas6 B 220 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MTAILIQSEEYVDLTFKLRGAPIPLDNGYLTYAALSRICPPLHELKSIGIHPIAGIPTRNNLLELTAQSRLKIRIYHQQIPLIYPYLAGQAFHIGQNFYQLDIPDYKPLISSESVYSRLVIIKGFQDSTNFIEAVQRQMDNLGIQGKIELLTRQDGTPQRRQLTINKEGKQFKVRGFGVKISELNPEDSLTLQEQGIGGKRKMMCGIFVPATRSKEEEET
Type I-B CRISPR-associated protein Cas7 C 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas7 D 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas7 E 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas7 F 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas7 G 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas7 H 323 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MMTQKKNDSNIPNYYLYGTVLTRYGLASLNHDIRRGNKTILQKGYWNNGKIHSFVGSSAIRWALRFYLQKQGYLVNRVWDEEEHINRLTSEDFDPEKFYDDDIFGFALLESAETEEDTSTTKRKKKQTKTSTPNQRMGALGMNMAVSLTPYDGAVKLGAKSGREKDSTSLHFTEYHATRYQYYFGIDATHLKDFSRILPMIDGIMNLPKVGGSSNIFNYPFCPDSLVFQWTNHFASYISYCFEYCDPKSKEAKLSQEFIDEVECGQIDPSKLWIGGTIVKDLQQLDNFESSPLNKAHIYRNRNEMIEALKTVIKRDLGLEESK
Type I-B CRISPR-associated protein Cas8 I 534 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MHHHHHHHHIVSTQPKISLSLHAADTTIMHRVGMTGLYMTLKRLEKQYPLSRQRGGHISWFLTADTIELFWEGSDFIALSWLINESFQLDDTGLIHLVGLDNDRIDLRQKIHIHEGICGVFLRLNKFYQAGEIINTELRFEEKQVEYQYKSLTWYAHQTFAEKLCEADTQQLRHDYIQITSWLYLGGIVRHARTQNTTKLEEKPEYALALLFVPVVCHYCLLHIPSEDLKERKPHRYLVVIPEIKDFEDASQRRWRLQQLETKQFHVSSLGEAGLLYYSLDDIQPEVAYYQACQVWLYEKTNKASRQRTLMSIEEIKIDKNILITYQQVQKYFKTNYQIIKYKQIFIKVNPIRSLIADNLVKGIHWWSNFWEKLVIEDSKEYLFNQLFSNREGFIIMAENSEEDKQYLIFIKVFQQAMKGNFAKIYAKTEEGKDPPIKKKVERLRAELNYCYDELSFKEYLSDFLVRGGLNKYFNEHQEEIALLIKKSPWQEIRIWSLLAIASYKPKDKLTNRDDSSLSNNQKLEEVNDDSEEE
Type I-B CRISPR-associated protein Cas11 J 138 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MAENSEEDKQYLIFIKVFQQAMKGNFAKIYAKTEEGKDPPIKKKVERLRAELNYCYDELSFKEYLSDFLVRGGLNKYFNEHQEEIALLIKKSPWQEIRIWSLLAIASYKPKDKLTNRDDSSLSNNQKLEEVNDDSEEE
Type I-B CRISPR-associated protein Cas11 K 138 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MAENSEEDKQYLIFIKVFQQAMKGNFAKIYAKTEEGKDPPIKKKVERLRAELNYCYDELSFKEYLSDFLVRGGLNKYFNEHQEEIALLIKKSPWQEIRIWSLLAIASYKPKDKLTNRDDSSLSNNQKLEEVNDDSEEE
Type I-B CRISPR-associated protein Cas11 L 138 Nostoc Sp. 'Peltigera Membranacea Cyanobiont' 210A , Synthetic Construct MAENSEEDKQYLIFIKVFQQAMKGNFAKIYAKTEEGKDPPIKKKVERLRAELNYCYDELSFKEYLSDFLVRGGLNKYFNEHQEEIALLIKKSPWQEIRIWSLLAIASYKPKDKLTNRDDSSLSNNQKLEEVNDDSEEE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA m 71 NA UUGCUCAAGAGAAGUCAUUUAAUAAGGCCACUGUUAAACGUAGGUGAGUCGUGGCUUUAUGCCGUUAGGCG
Target DNA strand n 65 NA ATATCTACGCGTAGATATATCTACGTTTAACAGTGGCCTTATTAAATGACTTCTCCATGATCTAC
Non-target DNA strand o 65 NA GTAGATCATGGAGAAGTCATTTAATAAGGCCACTGTTAAACGTAGATATATCTACGCGTAGATAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-12-01
Deposition Author(s): Chang, L. , Wang, S.