8EQU
Structure of sars-cov-2 orf3a in late endosome/lysosome-like environment, saposin a nanodisc
PDB DOI: 10.2210/pdb8equ/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2022-10-09 Deposition Author(s): Brauchi, S.E. , Cabezas-Bratesco, D. , Clapham, D.E. , Cristofori-Armstrong, B. , Dilan, T.L. , Houlihan, P.R. , Lee, G.Y. , Matamala, E. , Matthies, D. , Miller, A.N. , Ren, D. , Sanchez-Martinez, S. , Yan, R. , Yu, Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Structure of sars-cov-2 orf3a in late endosome/lysosome-like environment, saposin a nanodisc
Brauchi, S.E. , Cabezas-Bratesco, D. , Clapham, D.E. , Cristofori-Armstrong, B. , Dilan, T.L. , Houlihan, P.R. , Lee, G.Y. , Matamala, E. , Matthies, D. , Miller, A.N. , Ren, D. , Sanchez-Martinez, S. , Yan, R. , Yu, Z.
Primary Citation of Related Structures: 8EQU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ORF3a protein | A | 331 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPLGGRGLEVLFQGPGSGQLVGSGGLEGGGGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| ORF3a protein | B | 331 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPLGGRGLEVLFQGPGSGQLVGSGGLEGGGGWSHPQFEKGGGSGGGSGGGSWSHPQFEK |
| Saposin-A | C | 106 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MGGHHHHHHSSGVDLGTENLYFQSMSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCES |
| Saposin-A | F | 106 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MGGHHHHHHSSGVDLGTENLYFQSMSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCES |
| Saposin A, polyalanine model | D | 79 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Saposin A, polyalanine model | E | 79 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Saposin A, polyalanine model | G | 79 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Saposin A, polyalanine model | H | 79 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-10-09 Deposition Author(s): Brauchi, S.E. , Cabezas-Bratesco, D. , Clapham, D.E. , Cristofori-Armstrong, B. , Dilan, T.L. , Houlihan, P.R. , Lee, G.Y. , Matamala, E. , Matthies, D. , Miller, A.N. , Ren, D. , Sanchez-Martinez, S. , Yan, R. , Yu, Z.