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8EN5

Structure of gii.4 norovirus in complex with nanobody 56

PDB DOI: 10.2210/pdb8en5/pdb

Classification: VIRAL PROTEIN
Organism(s): Norovirus , Vicugna Pacos

Deposited: 2022-09-28
Deposition Author(s): Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.6 Å

8en5
Literature

Structure of gii.4 norovirus in complex with nanobody 56

Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.

Primary Citation of Related Structures: 8EN5


Proteins
Molecule Chains Sequence Length Organism Sequence
GII.4 P domain A 317 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV
GII.4 P domain B 317 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV
GII.4 P domain C 317 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV
GII.4 P domain D 317 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV
Nanobody 56 E 131 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGDSLRLSCATSGFILGRPVITWFRQAPGKEREGVLCISGSDEITYFIDSVKGRFTISRDNAKNTVYLQINSLKPEDTANYYCAARTFTAGCYSRSIAYPYWGQGTQVTVSSHHHHHH
Nanobody 56 F 131 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGDSLRLSCATSGFILGRPVITWFRQAPGKEREGVLCISGSDEITYFIDSVKGRFTISRDNAKNTVYLQINSLKPEDTANYYCAARTFTAGCYSRSIAYPYWGQGTQVTVSSHHHHHH
Nanobody 56 G 131 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGDSLRLSCATSGFILGRPVITWFRQAPGKEREGVLCISGSDEITYFIDSVKGRFTISRDNAKNTVYLQINSLKPEDTANYYCAARTFTAGCYSRSIAYPYWGQGTQVTVSSHHHHHH
Nanobody 56 H 131 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGDSLRLSCATSGFILGRPVITWFRQAPGKEREGVLCISGSDEITYFIDSVKGRFTISRDNAKNTVYLQINSLKPEDTANYYCAARTFTAGCYSRSIAYPYWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-09-28
Deposition Author(s): Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.