PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8EMY

Structure of gii.4 norovirus in complex with nanobody 82

PDB DOI: 10.2210/pdb8emy/pdb

Classification: VIRAL PROTEIN
Organism(s): Norovirus , Vicugna Pacos

Deposited: 2022-09-28
Deposition Author(s): Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.7 Å

Literature

Structure of gii.4 norovirus in complex with nanobody 82

Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.

Primary Citation of Related Structures: 8EMY


Proteins
Molecule Chains Sequence Length Organism Sequence
GII.4 P domain A 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
GII.4 P domain B 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
GII.4 P domain C 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
GII.4 P domain D 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
GII.4 P domain E 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
GII.4 P domain F 307 Norovirus , Vicugna Pacos TKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHITGSRNYTMNLASQNWNDYDPTEEIPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDGGTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLDCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM
Nanobody 82 G 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Nanobody 82 H 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Nanobody 82 I 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Nanobody 82 J 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Nanobody 82 K 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Nanobody 82 L 122 Norovirus , Vicugna Pacos QVQLQESGGGLVQPGSSLRLSCAASGFTFGGYAMHWVRQAPGKGPEWVSSINSGGDITNYATSVKGRFSISRDNPSKTLYLQMNSLRPEDSAVYYCKTQLANRDYRGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-09-28
Deposition Author(s): Hansman, G. , Kher, G. , Koromyslova, A. , Pancera, M. , Sabin, C.