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8E5D

Crystal structure of double-stranded dna deaminase toxin ddda in complex with dna with the target cytosine parked in the major groove

PDB DOI: 10.2210/pdb8e5d/pdb

Classification: TOXIN/DNA
Organism(s): Burkholderia Cenocepacia , Synthetic Construct

Deposited: 2022-08-21
Deposition Author(s): Aihara, H. , Shi, K. , Yin, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å

8e5d
Literature

Crystal structure of double-stranded dna deaminase toxin ddda in complex with dna with the target cytosine parked in the major groove

Aihara, H. , Shi, K. , Yin, L.

Primary Citation of Related Structures: 8E5D


Proteins
Molecule Chains Sequence Length Organism Sequence
Double-stranded DNA deaminase toxin A A 139 Burkholderia Cenocepacia , Synthetic Construct GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPNYANAGHVAGQSALFMRDNGISEGLVFHNNPEGTCGFCVNMTETLLPENAKMTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3') c 14 NA GTACCGGACGTTGC
DNA (5'-D(*GP*TP*AP*CP*CP*GP*GP*AP*CP*GP*TP*TP*GP*C)-3') b 14 NA GCAACGTCCGGTAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-08-21
Deposition Author(s): Aihara, H. , Shi, K. , Yin, L.