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FASTA Sequence PDB Format mmCIF Format
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8DZK

Dbr1 in complex with 5-mer cleavage product

PDB DOI: 10.2210/pdb8dzk/pdb

Classification: HYDROLASE/RNA
Organism(s): Entamoeba Histolytica , Synthetic Construct

Deposited: 2022-08-08
Deposition Author(s): Clark, N.E. , Taylor, A.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

8dzk
Literature

Dbr1 in complex with 5-mer cleavage product

Clark, N.E. , Taylor, A.B.

Primary Citation of Related Structures: 8DZK


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA lariat debranching enzyme, putative A 356 Entamoeba Histolytica , Synthetic Construct GAMATEQIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN
RNA lariat debranching enzyme, putative B 356 Entamoeba Histolytica , Synthetic Construct GAMATEQIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN
RNA lariat debranching enzyme, putative C 356 Entamoeba Histolytica , Synthetic Construct GAMATEQIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN
RNA lariat debranching enzyme, putative D 356 Entamoeba Histolytica , Synthetic Construct GAMATEQIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN
RNA lariat debranching enzyme, putative E 356 Entamoeba Histolytica , Synthetic Construct GAMATEQIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3') f 5 NA GUGUU
RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3') g 5 NA GUGUU
RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3') n 5 NA GUGUU
RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3') o 5 NA GUGUU
RNA (5'-R(P*(G46)P*UP*GP*UP*U)-3') p 5 NA GUGUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-08-08
Deposition Author(s): Clark, N.E. , Taylor, A.B.