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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8DY9

Streptomyces venezuelae rnap unconstrained open promoter complex with whia and whib transcription factors

PDB DOI: 10.2210/pdb8dy9/pdb

Classification: TRANSCRIPTION/TRANSFERASE/DNA
Organism(s): Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct

Deposited: 2022-08-03
Deposition Author(s): Campbell, E.A. , Lilic, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.12 Å

8dy9
Literature

Streptomyces venezuelae rnap unconstrained open promoter complex with whia and whib transcription factors

Campbell, E.A. , Lilic, M.

Primary Citation of Related Structures: 8DY9


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 340 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
DNA-directed RNA polymerase subunit alpha B 340 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHNPDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTDAALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAKLAGMGLALKDSPPGFDPTAAADAFGADDDADAGFVETEQY
DNA-directed RNA polymerase subunit beta C 1178 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MQGTGTRVVSPSPRKDPLLAASRNASTNTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKARVEAALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYGAPLFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFSAKIIPSRGAWLEMEIDKRDLVGVRIDRKRKQSVTVLLKALGWTTEQILQEFGEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETIGENGNEIVVETDDIDHFGNRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRVNAFGFIETPYRKVVDGQVTDEVDYVTADEEDRFVIAQANAALDEELRFSENRVLVRKRGGEVDYVEPSDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSEAPLVGTGMEYRCATDAGDVLKAEKDGVVQELSADYITVANDDGTYITYRLHKFSRSNQGTSVNQKVVVDEGDRVIEGQVLADGPATEDGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKIIGVRVFDREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADKVAPGTNVATPVFDGAREDELAGLLNHTIPNRDGERMVLPTGKARLFDGRSGEPFPDPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLSRREPSSVEEV
DNA-directed RNA polymerase subunit beta' D 1298 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct DDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKVIYFAAYMITYVDDERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLENDLGELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELLYRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVSAFLQTANSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGEGRAFGSTAEAIMAFDAGELALQSQIDIRFPVGTVAPRGWVPPVTEEGEPEWQQGDSFRLRTSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWATRSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKEERTQELIAIWTKATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIAERGADGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTRSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEARQPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGTDETAFPISKRARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVAEVQKVYNSQGVSIHDKHIEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEEAKAAMYSAVGYDDIDYSPFGSGSGQAVPLEDYDYGPYNQ
DNA-directed RNA polymerase subunit omega E 90 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MSSSITAPEGIINPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREINAGLLTSEAIEGPAQ
RNA polymerase sigma factor SigA F 516 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct FVSASTSRTLPPEIAESESVMALIERGKADGQIAGDDVRRAFEADQIPPTQWKNVLRSLNQILEEEGVTLMVSAAESPKRARKSVAAKSPAKRTATKTVTARTTVTKTTVTAAPASAAEDADPADEAGSAAKKTAAKKTVAKKTVAKKTVAKKTAAKKTTSKKDADELVEGEELLEDVAPGKGEEEETEGESKGFVLSDEDEDDAPAQQVAVAGATADPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAEDKLANSDKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
RNA polymerase-binding protein RbpA G 124 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MSERALRGTRLVVTSYETDRGIDLAPRQAVEYACEKGHRFEMPFSVEAEIPPEWECKVCGIQALLVDGDGPEEKKGKPARTHWDMLMERRTREELEEVLAERLAVLRSGAMNIAVHPRDSRKSA
Transcriptional regulator WhiB H 87 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MTELFQELLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALQNDERFGIWGGLSERERRRLKKAAV
Probable cell division protein WhiA I 327 Streptomyces Venezuelae , Streptomyces Venezuelae Atcc 10712 , Synthetic Construct MTAAVKDEISRLPVTRTCCRKAEVSSILRFAGGLHLVSGRIVIEAELDTAMAARRLKRDILEIFGHSSELIVMAPGGLRRGSRFVVRVVAGGDQLARQTGLVDGRGRPIRGLPPQVVSGATCDAEAAWRGAFLAHGSLTEPGRSSSLEVTCPGPEAALALVGAARRLSIAAKAREVRGVDRVVVRDGDAIGALLTRLGAHESVLAWEERRMRREVRATANRLANFDDANLRRSARAAVAAGARVQRALEILGEEVPEHLAAAGRLRMEHKQASLEELGALADPPLTKDAVAGRIRRLLAMADKRAQDLGIPGTESNLTEELDDSLVG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (38-MER) p 49 NA GGTGTCAAGCCAATTGGCCCGGTGTGTCGCACGATCTGGCTGATATCAC
DNA (38-MER) r 49 NA GGTGTCAAGCCAATTGGCCCGGTGTGTCGCACGATCTGGCTGATATCAC
DNA (38-MER) o 49 NA GTGATATCAGCCAGATCGTGCGACACACCGGGCCAATTGGCTTGACACC
DNA (38-MER) q 49 NA GTGATATCAGCCAGATCGTGCGACACACCGGGCCAATTGGCTTGACACC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-08-03
Deposition Author(s): Campbell, E.A. , Lilic, M.