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8DW4

Glycosylase muty variant n146s in complex with dna containing d(8-oxo-g) paired with an abasic site product (ap) generated by the enzyme in crystals by removal of calcium

PDB DOI: 10.2210/pdb8dw4/pdb

Classification: HYDROLASE/DNA
Organism(s): Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-07-31
Deposition Author(s): David, S.S. , Demir, M. , Horvath, M.P. , Russelburg, L.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.49 Å

Literature

Glycosylase muty variant n146s in complex with dna containing d(8-oxo-g) paired with an abasic site product (ap) generated by the enzyme in crystals by removal of calcium

David, S.S. , Demir, M. , Horvath, M.P. , Russelburg, L.P.

Primary Citation of Related Structures: 8DW4


Proteins
Molecule Chains Sequence Length Organism Sequence
Adenine DNA glycosylase A 365 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTRETERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGSVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRLVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWASGVRRP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3') b 11 NA AAGACGTGGAC
DNA (5'-D(P*GP*TP*CP*CP*AP*(AAB)P*GP*TP*CP*T)-3') c 11 NA TGTCCAXGTCT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-07-31
Deposition Author(s): David, S.S. , Demir, M. , Horvath, M.P. , Russelburg, L.P.